LXL04_036582 | RubberDandelionOmics

Gene overview

LXL04_036582

Reference: OH-1004 Chr: Chr08 Coordinates: 44957111-44960508 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2271 bp · LXL04_036582|LXL04_036582|OH1004|cDNA

ATGTTTCATCCTAATCCTTCTCTCGACTCCATTGAATATGGCCTCCAAAACCAGAAATTAAACAAGGCATCATGTACGGCGGTTTTGAGTTTAGCATACCAGAGTCTTGGAGTCGTATACGGCGATCTAAGCACTTCCCCTCTCTACGTTTACAAAACCACATTCTCAGGGAAGCTTAGTCTTCACGAAGACGATGAAGAAATTTACGGCGTTCTTTCCTTCATCTTCTGGACTTTTACGCTAATCGCCCTCCTTAAATA...

CDS

Download CDS FASTA

2271 bp · LXL04_036582|LXL04_036582|OH1004|CDS

ATGTTTCATCCTAATCCTTCTCTCGACTCCATTGAATATGGCCTCCAAAACCAGAAATTAAACAAGGCATCATGTACGGCGGTTTTGAGTTTAGCATACCAGAGTCTTGGAGTCGTATACGGCGATCTAAGCACTTCCCCTCTCTACGTTTACAAAACCACATTCTCAGGGAAGCTTAGTCTTCACGAAGACGATGAAGAAATTTACGGCGTTCTTTCCTTCATCTTCTGGACTTTTACGCTAATCGCCCTCCTTAAATA...

Protein

Download Protein FASTA

756 aa · LXL04_036582|LXL04_036582|OH1004|PROTEIN

MFHPNPSLDSIEYGLQNQKLNKASCTAVLSLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHEDDEEIYGVLSFIFWTFTLIALLKYVFIVMSADDNGEGGTFALYSLLCRHAKISMLPNQQETDEKLSAYGVAKTAETWQSFELKSFFEKHKKFRKGLLIFVLLGTCMTIGDGVFTPAISVLSAVSGVRIKVAGLHENYVVAISCVLLVGLFSIQHHGTHRVAFLFAPIVTAWLLSIAGIGIYNIIQWNPQIFHALSPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036582`
TK1151 ID	TkA04G035360
OH-1004 ID	LXL04_036582
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036582

Location Chr08:44957111-44960508 (+)

Description Similar to POT1: Potassium transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30070`	High-affinity potassium transporter that could play a major role in the uptake of potassium from the rhizosphere.	AtKUP1: an Arabidopsis gene encoding high-affinity potassium transport activity.1998 · DOI: 10.1105/tpc.10.1.51
`At2g40540`	Low-affinity potassium transporter.	A mutation in the Arabidopsis KT2/KUP2 potassium transporter gene affects shoot cell expansion.2002 · DOI: 10.1105/tpc.010322

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0669700`	High-affinity potassium transporter.	Inventory and functional characterization of the HAK potassium transporters of rice.2002 · DOI: 10.1104/pp.007781
`Os01g0935500`	High-affinity potassium transporter.	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells.2011 · DOI: 10.1016/j.jbiosc.2010.10.014
`Os01g0369300`	High-affinity potassium transporter.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036582 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006813 potassium ion transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015079 potassium ion transmembrane transporter activity Molecular Function

GO:0015081 sodium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G30070

ath:AT2G40540

dosa:Os01g0369300

dosa:Os01g0935500

dosa:Os07g0669700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.452

Rank 1 · LXL04_036582 · OH-1004

Lysosome / Vacuole0.315

Rank 2 · LXL04_036582 · OH-1004

Cytoplasm0.133

Rank 3 · LXL04_036582 · OH-1004

Endoplasmic reticulum0.116

Rank 4 · LXL04_036582 · OH-1004

Golgi apparatus0.093

Rank 5 · LXL04_036582 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02705.23K_trans30-503 aa

PF22776.1K_trans_C533-754 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036582	`PF02705.23`	K_trans	30	503	4.5e-160	533.8
LXL04_036582	`PF22776.1`	K_trans_C	533	754	4.9e-26	92.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22397`	Arabidopsis thaliana	Potassium transporter 1	70.346%	Swiss-Prot	strong database homology
`O22881`	Arabidopsis thaliana	Potassium transporter 2	53.974%	Swiss-Prot	strong database homology
`Q8H3P9`	Oryza sativa subsp. japonica	Potassium transporter 7	56.427%	Swiss-Prot	strong database homology
`Q942X8`	Oryza sativa subsp. japonica	Probable potassium transporter 2	55.774%	Swiss-Prot	strong database homology
`Q5ZC87`	Oryza sativa subsp. japonica	Probable potassium transporter 3	54.639%	Swiss-Prot	strong database homology

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