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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G034490
Reference: TK1151 Chr: Chr04 Coordinates: 9246959-9248802 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1426 bp · TkA04G034490|TK1151|cDNA

AAATAATACAACATTTTTTAGTATACGGTTGGCTTGTTTGAGTTGAAGTAGTTCTTGTACTTCTATACCAGCCCATAACAGAAAGAAAAGAAAGAGAGGGGTCGCACTTGCACACGGCGGCAACCGCCATCAAAAGATACGCAAATGGCCGGTAGGAATTACATCCCTCCAGATGCATTAAAATTCAGACAAGATTCTCACTCTCGCCGTGCGCCAATTGAATCTCCTCCGCGCCACCACCACCACGTCGAAGACCGCAT...

CDS

Download CDS FASTA

888 bp · TkA04G034490|TK1151|CDS

ATGGCCGGTAGGAATTACATCCCTCCAGATGCATTAAAATTCAGACAAGATTCTCACTCTCGCCGTGCGCCAATTGAATCTCCTCCGCGCCACCACCACCACGTCGAAGACCGCATCGCCGTCCACCACCGTGAAATCCAATCACTCCTCAGCGACAACCAACGCCTCGCCGCCACTCACGTCGCCCTCAAACAGGAAATGTCTCTCTCCGTCCAGGAACTCCGCCATCTCTCCTCCGCTGCCAGCAATGTCAAGGCCGA...

Protein

Download Protein FASTA

295 aa · TkA04G034490|TK1151|PROTEIN

MAGRNYIPPDALKFRQDSHSRRAPIESPPRHHHHVEDRIAVHHREIQSLLSDNQRLAATHVALKQEMSLSVQELRHLSSAASNVKAERDAEVREVYEKAVKMEAEARLIDELSAELVQVRGDIQKLSSERKELNEKLDKVNGDLAKERSKAHQVPMIKSEIEAMHNELQRGRAAVECEKKVYATNIEQGQLMEKSMMSMAREIEKLQAELADKRARAASAGYGAGFVNHDMGYGGNAYPYVAHQIQGSGPVPIPIPVHVP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G034490
TK1151 IDTkA04G034490
OH-1004 IDLXL04_036604
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 72.304
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G034490
LocationChr04:9246959-9248802 (+)
DescriptionSimilar to FLX: Protein FLC EXPRESSOR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30120 Transactivator required for FRIGIDA-mediated activation of FLC and for the expression of the repressors of flowering AGL27/MAF1 and AGL31/MAF2. No verified direct reference in this release
At3g14750 Has no transcriptional activation activity. No verified direct reference in this release
At1g55170 Has no transcriptional activation activity. No verified direct reference in this release
At1g67170 Has no transcriptional activation activity. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036604 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009908 flower development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016604 nuclear body Cellular Component
KEGG gene cross-reference
ath:AT1G55170
ath:AT1G67170
ath:AT2G30120
ath:AT3G14750
ath:AT5G61920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627
Rank 1 · TkA04G034490 · TK1151
Nucleus0.371
Rank 2 · TkA04G034490 · TK1151
Cell membrane0.155
Rank 3 · TkA04G034490 · TK1151
Endoplasmic reticulum0.044
Rank 4 · TkA04G034490 · TK1151
Lysosome / Vacuole0.030
Rank 5 · TkA04G034490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08614ATG1629-118 aa
PF30378CEP135_TSGA10_CC32-212 aa
PF28656BNI5_helical32-108 aa
PF26012HH_RND_rel33-86 aa
PF07989Cnn_1N33-79 aa
PF24922ACBP4_C34-76 aa
PF13166AAA_1334-222 aa
PF07926TPR_MLP1_234-57 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G034490PF08614ATG16291180.5511.1
TkA04G034490PF30378CEP135_TSGA10_CC322120.007315.4
TkA04G034490PF28656BNI5_helical321083.88.4
TkA04G034490PF26012HH_RND_rel33862.39.2
TkA04G034490PF07989Cnn_1N33795.67.9
TkA04G034490PF24922ACBP4_C34760.008517.0
TkA04G034490PF13166AAA_13342221.87.8
TkA04G034490PF07926TPR_MLP1_234572.58.9
TkA04G034490PF04102SlyX35850.03815.3
TkA04G034490PF06818Fez1351400.1213.5
TkA04G034490PF25450Rab11-FIP335870.4111.7
TkA04G034490PF06103DUF94835840.5411.2
TkA04G034490PF30842LEKR135963.78.6
TkA04G034490PF04977DivIC36640.2811.7
TkA04G034490PF07544Med936651.69.6
TkA04G034490PF30907IPGA1_CC36765.28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IMQ0Arabidopsis thalianasp|F4IMQ0|FLX_ARATH Protein FLC EXPRESSOR43.800%Swiss-ProtMedium
Q93V84Arabidopsis thalianasp|Q93V84|FLXL1_ARATH Protein FLX-like 136.200%Swiss-ProtMedium
Q9C717Arabidopsis thalianasp|Q9C717|FLXL3_ARATH Protein FLX-like 338.700%Swiss-ProtMedium
Q84TD8Arabidopsis thalianasp|Q84TD8|FLXL2_ARATH Protein FLX-like 235.500%Swiss-ProtMedium

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