TkA04G034250 | RubberDandelionOmics

Gene overview

TkA04G034250

Reference: TK1151 Chr: Chr04 Coordinates: 9173303-9174617 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

900 bp · TkA04G034250|TK1151|cDNA

CTTTTATACTATATTCTACTTTTAGTCTTCTCTGATCTTCTTCATATCTGAGTTTCAAATTAAACCTGATTCATTAAAACTAGCTCCCACACTTTCATTAGGCCAGACAAATGGGTTCGGGAAGTTCTCCATGTGCCTCCTGCAAATTGTTGAGGCGTCGCTGTGCCAAAGACTGCATCTTCGCTCCTTACTTCCCTCCCGATGATCCTCATAAGTTCGCCATTGTTCATAAAGTCTTTGGTGCTAGCAATGTCAGCAAG...

CDS

Download CDS FASTA

558 bp · TkA04G034250|TK1151|CDS

ATGGGTTCGGGAAGTTCTCCATGTGCCTCCTGCAAATTGTTGAGGCGTCGCTGTGCCAAAGACTGCATCTTCGCTCCTTACTTCCCTCCCGATGATCCTCATAAGTTCGCCATTGTTCATAAAGTCTTTGGTGCTAGCAATGTCAGCAAGATGTTGCAGGAGCTCCCAGTTCACCAAAGAGCGGACGCAGTTAGCAGTCTGGTATATGAAGCAAACGCAAGAATGAGAGATCCGGTGTACGGTTGTGTCGGAGCAATTTC...

Protein

Download Protein FASTA

185 aa · TkA04G034250|TK1151|PROTEIN

MGSGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDQPHELPTTHLHHQSMIDCDAKSLLLSGSNHNNNNTNDHFGDQIMPQFLSYTSSNHHNVIQDPLKRESLWT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G034250`
TK1151 ID	TkA04G034250
OH-1004 ID	LXL04_012198
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	66.500
Protein coverage (%)	TK1151 99.459 / OH-1004 83.796 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G034250

Location Chr04:9173303-9174617 (-)

Description Similar to LBD12: LOB domain-containing protein 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30130`	LOB domain-containing protein 12.	No verified direct reference in this release
`At1g31320`	LOB domain-containing protein 4.	No verified direct reference in this release
`At2g28500`	LOB domain-containing protein 11.	No verified direct reference in this release
`At5g63090`	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.	No verified direct reference in this release
`At1g16530`	LOB domain-containing protein 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010016 shoot system morphogenesis Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0048364 root development Biological Process

GO:0080117 secondary growth Biological Process

GO:2000377 regulation of reactive oxygen species metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G07900

ath:AT1G16530

ath:AT1G31320

ath:AT2G28500

ath:AT2G30130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · TkA04G034250 · TK1151

Cytoplasm0.094

Rank 2 · TkA04G034250 · TK1151

Cell membrane0.022

Rank 3 · TkA04G034250 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA04G034250 · TK1151

Plastid0.011

Rank 5 · TkA04G034250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195LOB7-104 aa

PF13334DUF409484-105 aa

PF12938M_domain85-154 aa

PF03195LOB130-171 aa

PF13334DUF4094149-149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G034250	`PF03195`	LOB	7	104	1.4e-43	148.2
TkA04G034250	`PF13334`	DUF4094	84	105	0.016	16.3
TkA04G034250	`PF12938`	M_domain	85	154	0.0053	17.3
TkA04G034250	`PF03195`	LOB	130	171	1.4e-43	148.2
TkA04G034250	`PF13334`	DUF4094	149	149	0.016	16.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LBW3`	Arabidopsis thaliana	sp\|Q8LBW3\|LBD12_ARATH LOB domain-containing protein 12	84.400%	Swiss-Prot	High
`Q9SHE9`	Arabidopsis thaliana	sp\|Q9SHE9\|LBD4_ARATH LOB domain-containing protein 4	73.600%	Swiss-Prot	Medium
`Q9SK08`	Arabidopsis thaliana	sp\|Q9SK08\|LBD11_ARATH LOB domain-containing protein 11	66.100%	Swiss-Prot	Medium
`Q9FML4`	Arabidopsis thaliana	sp\|Q9FML4\|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES	69.500%	Swiss-Prot	Medium
`Q9SA51`	Arabidopsis thaliana	sp\|Q9SA51\|LBD3_ARATH LOB domain-containing protein 3	68.200%	Swiss-Prot	Medium

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