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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G025050
Reference: TK1151 Chr: Chr04 Coordinates: 6532118-6533884 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1620 bp · TkA04G025050|TK1151|cDNA

ATGTTTACCCCCAAGACCATCAAATCGTGTTTCCTCGCTTGTAAAGACACCGCATTCGTCGCAAAGATCCATGCTTTGCTGATAGTTTCCGGGTACATTAATAGTGGGAATTGTAATACCCAGCTCATTGCCTCGTATTCTAGAACCGGGGATATTGAATTTGCTCACAAGGTGTTTGATAGAATTCCTAAGAAAGGGGTGGATGTTTGGAACGCTATAATAATCGCTTACTCTCGTAAAGATAGTCCTGGTGAAGTAAT...

CDS

Download CDS FASTA

1620 bp · TkA04G025050|TK1151|CDS

ATGTTTACCCCCAAGACCATCAAATCGTGTTTCCTCGCTTGTAAAGACACCGCATTCGTCGCAAAGATCCATGCTTTGCTGATAGTTTCCGGGTACATTAATAGTGGGAATTGTAATACCCAGCTCATTGCCTCGTATTCTAGAACCGGGGATATTGAATTTGCTCACAAGGTGTTTGATAGAATTCCTAAGAAAGGGGTGGATGTTTGGAACGCTATAATAATCGCTTACTCTCGTAAAGATAGTCCTGGTGAAGTAAT...

Protein

Download Protein FASTA

539 aa · TkA04G025050|TK1151|PROTEIN

MFTPKTIKSCFLACKDTAFVAKIHALLIVSGYINSGNCNTQLIASYSRTGDIEFAHKVFDRIPKKGVDVWNAIIIAYSRKDSPGEVIDLYHELKSAGIKPDSSTFTVALKACTSTMNLELGEEIRKQAINHGGRGSEAIDMYRLMQNEGMEGDRVAILGLIQACTNINDTKIGLSVHGYLIRRHLLHMDVVIQTSILDMHSKTGNLELASRVFKSIHHKTIVAWSALISGYAQNGFPITAFDLFLDMQIFGFKPDTSSII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G025050
TK1151 IDTkA04G025050
OH-1004 IDLXL04_036773
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)91.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G025050
LocationChr04:6532118-6533884 (-)
DescriptionSimilar to PCMP-E96: Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25060 Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial. No verified direct reference in this release
At3g12770 Pentatricopeptide repeat-containing protein At3g12770. No verified direct reference in this release
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At3g01580 Putative pentatricopeptide repeat-containing protein At3g01580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036773 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0099402 plant organ development Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12770
ath:AT3G25060
ath:AT5G27110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.656
Rank 1 · TkA04G025050 · TK1151
Plastid0.187
Rank 2 · TkA04G025050 · TK1151
Nucleus0.040
Rank 3 · TkA04G025050 · TK1151
Cytoplasm0.032
Rank 4 · TkA04G025050 · TK1151
Cell membrane0.005
Rank 5 · TkA04G025050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_339-77 aa
PF01535PPR41-67 aa
PF13041PPR_242-68 aa
PF12854PPR_142-61 aa
PF23276TPR_2444-111 aa
PF22330Rib_mS39_PPR52-75 aa
PF29070MSC6_N68-116 aa
PF01535PPR69-98 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G025050PF13812PPR_339774.7e-1762.5
TkA04G025050PF01535PPR41677e-51167.7
TkA04G025050PF13041PPR_242682.5e-48162.7
TkA04G025050PF12854PPR_142611.4e-1557.4
TkA04G025050PF23276TPR_24441111.6e-1041.7
TkA04G025050PF22330Rib_mS39_PPR52750.006317.0
TkA04G025050PF29070MSC6_N681161.9e-1041.1
TkA04G025050PF01535PPR69987e-51167.7
TkA04G025050PF13041PPR_2691122.5e-48162.7
TkA04G025050PF20431E_motif77997.2e-1452.5
TkA04G025050PF17177PPR_long771190.001618.6
TkA04G025050PF29978ATP18_TPR861260.03314.8
TkA04G025050PF13812PPR_3891244.7e-1762.5
TkA04G025050PF12854PPR_1971061.4e-1557.4
TkA04G025050PF01535PPR1031287e-51167.7
TkA04G025050PF01535PPR1331497e-51167.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJR6Arabidopsis thalianasp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial42.200%Swiss-ProtMedium
Q9LTV8Arabidopsis thalianasp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g1277031.600%Swiss-ProtMedium
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial31.100%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic31.000%Swiss-ProtMedium
Q9SS97Arabidopsis thalianasp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g0158030.500%Swiss-ProtMedium

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