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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_036773
Reference: OH-1004 Chr: Chr08 Coordinates: 48149618-48151384 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1767 bp · LXL04_036773|LXL04_036773|OH1004|cDNA

ATGTTTTCCCCCAAGACCATCAAATCGTGTTTCCTCGCTTGTAAAGACACCGCATTCGTCGCAAAGATCCATGCTTTGCTGATAGTTTCCGGGTACATTAATAGTGGGAATTGTAATACCCAGCTCATTGCCTCGTATTCTAGAACCGGGGATATTGAATTTGCTCACAAGGTGTTTGATAGAATTCCTAAGAAAGGGGTGGATGTTTGGAACGCTATAATAATCGCTTACTCTCGTAAAGATAGTCCTGGTGAAGTAAT...

CDS

Download CDS FASTA

1767 bp · LXL04_036773|LXL04_036773|OH1004|CDS

ATGTTTTCCCCCAAGACCATCAAATCGTGTTTCCTCGCTTGTAAAGACACCGCATTCGTCGCAAAGATCCATGCTTTGCTGATAGTTTCCGGGTACATTAATAGTGGGAATTGTAATACCCAGCTCATTGCCTCGTATTCTAGAACCGGGGATATTGAATTTGCTCACAAGGTGTTTGATAGAATTCCTAAGAAAGGGGTGGATGTTTGGAACGCTATAATAATCGCTTACTCTCGTAAAGATAGTCCTGGTGAAGTAAT...

Protein

Download Protein FASTA

588 aa · LXL04_036773|LXL04_036773|OH1004|PROTEIN

MFSPKTIKSCFLACKDTAFVAKIHALLIVSGYINSGNCNTQLIASYSRTGDIEFAHKVFDRIPKKGVDVWNAIIIAYSRKDSPGEVIDLYHELKSAGIKPDSSTFTVALKACTSTMNLELGEEIRKQAINHGYEHDVFVGSSLLNLYAKCGKMNDALKVFEKMPRRDLVSWTTMITGFAQSGRGSEAIDMYRLMQNEGMEGDRVAILGLIQACTNINDTKIGLSVHGYLIRRHLLHMDVVIQTSILDMHSKTGNLELASR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_036773
TK1151 IDTkA04G025050
OH-1004 IDLXL04_036773
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)91.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_036773
LocationChr08:48149618-48151384 (+)
DescriptionSimilar to PCMP-E96: Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25060 Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial. No verified direct reference in this release
At3g12770 Pentatricopeptide repeat-containing protein At3g12770. No verified direct reference in this release
At5g27110 Pentatricopeptide repeat-containing protein At5g27110. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036773 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0099402 plant organ development Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G12770
ath:AT3G25060
ath:AT5G27110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.646
Rank 1 · LXL04_036773 · OH-1004
Plastid0.188
Rank 2 · LXL04_036773 · OH-1004
Nucleus0.042
Rank 3 · LXL04_036773 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_036773 · OH-1004
Cell membrane0.005
Rank 5 · LXL04_036773 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N68-162 aa
PF13041.13PPR_269-112 aa
PF13041.13PPR_2136-167 aa
PF01535.27PPR141-167 aa
PF13041.13PPR_2167-213 aa
PF01535.27PPR169-198 aa
PF13041.13PPR_2269-305 aa
PF01535.27PPR271-301 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_036773PF29070.1MSC6_N681621e-1351.9
LXL04_036773PF13041.13PPR_2691121.1e-62208.7
LXL04_036773PF13041.13PPR_21361671.1e-62208.7
LXL04_036773PF01535.27PPR1411674.9e-66215.2
LXL04_036773PF13041.13PPR_21672131.1e-62208.7
LXL04_036773PF01535.27PPR1691984.9e-66215.2
LXL04_036773PF13041.13PPR_22693051.1e-62208.7
LXL04_036773PF01535.27PPR2713014.9e-66215.2
LXL04_036773PF29070.1MSC6_N3154631e-1351.9
LXL04_036773PF13041.13PPR_23684161.1e-62208.7
LXL04_036773PF01535.27PPR3713994.9e-66215.2
LXL04_036773PF20431.5E_motif4915505.2e-1556.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJR6Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g25060, mitochondrial47.684%Swiss-Protmoderate database homology
Q9LTV8Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g1277038.516%Swiss-Protmoderate database homology
O04659Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g2711033.156%Swiss-Protmoderate database homology
P0C899Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At3g4914233.511%Swiss-Protmoderate database homology
Q9SIT7Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g1360029.830%Swiss-Protweak database homology

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