TkA04G023170 | RubberDandelionOmics

Gene overview

TkA04G023170

Reference: TK1151 Chr: Chr04 Coordinates: 5926358-5930955 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3405 bp · TkA04G023170|TK1151|cDNA

TAGAATCTAAGATACCTTTAAACAACAATCAAAACTTCTCTTCTAATCAAACCTTAGACCCCCCAACCATCAGTTGGTAGACTTACCCATACACACATATCCCCTTCAAAACCCCCTACTCTCATTCTCCACCATCACATTCACACTCATTCTTTCTTTCTTGCTGCCATGGCTGCCCTCTTTACAGGCTCCCATGGCCACCATGATCTTCCGGATCATGATACCCAATCGAATATATGTCGGGTATGCAGTGATGAGAT...

CDS

Download CDS FASTA

3084 bp · TkA04G023170|TK1151|CDS

ATGGCTGCCCTCTTTACAGGCTCCCATGGCCACCATGATCTTCCGGATCATGATACCCAATCGAATATATGTCGGGTATGCAGTGATGAGATTAGCCAACAGTTTGTTGCTTGTCGCGAATGCAAGTTCCCAGTGTGTCGGCCTTGTTACATTTATGAACGAAGCGAAGGGAACCAATGCTGCCCCCAATGCAACGTTCGATATAAACGTCACAAAGGTTGTCCACGAGTTGTTGGAGATGATGAAGAAAGTGACGATGG...

Protein

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1027 aa · TkA04G023170|TK1151|PROTEIN

MAALFTGSHGHHDLPDHDTQSNICRVCSDEISQQFVACRECKFPVCRPCYIYERSEGNQCCPQCNVRYKRHKGCPRVVGDDEESDDGDDFEDEFQMKDRQEAQDRNRVDNQSENGDSHPPKQYNTNGFAFSSAGSVAGRDLDRDRDDEWKDRVEKWKTRQEKRGLVTKGDDANDPGEEDDYLMAEARQPLWRKVPISSSLINPYRIVIVLRLVILIFFFRFRIMTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G023170`
TK1151 ID	TkA04G023170
OH-1004 ID	LXL04_036828
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G023170

Location Chr04:5926358-5930955 (-)

Description Similar to CESA4: Cellulose synthase A catalytic subunit 4 [UDP-forming]

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g44030`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	Impairment of cellulose synthases required for Arabidopsis secondary cell wall formation enhances disease resistance.2007 · DOI: 10.1105/tpc.106.048058

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0467800`	Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation (By similarity).	Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.2003 · DOI: 10.1104/pp.103.022442
`UniProt: A2XNT2`	Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	No verified direct reference in this release
`Os03g0837100`	Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	No verified direct reference in this release
`Os07g0424400`	Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	No verified direct reference in this release
`Os07g0252400`	Probable catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036828 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0008270 zinc ion binding Molecular Function

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT5G44030

dosa:Os03g0837100

dosa:Os07g0424400

dosa:Os10g0467800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.610

Rank 1 · TkA04G023170 · TK1151

Endoplasmic reticulum0.181

Rank 2 · TkA04G023170 · TK1151

Golgi apparatus0.136

Rank 3 · TkA04G023170 · TK1151

Cytoplasm0.131

Rank 4 · TkA04G023170 · TK1151

Lysosome / Vacuole0.089

Rank 5 · TkA04G023170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14569zf-UDP17-85 aa

PF14570zf-RING_423-69 aa

PF13632Glyco_trans_2_3211-224 aa

PF03552Cellulose_synt284-1019 aa

PF13632Glyco_trans_2_3518-571 aa

PF14570zf-RING_4585-599 aa

PF13632Glyco_trans_2_3717-823 aa

PF13564DoxX_2805-864 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G023170	`PF14569`	zf-UDP	17	85	1.2e-27	96.4
TkA04G023170	`PF14570`	zf-RING_4	23	69	0.013	16.0
TkA04G023170	`PF13632`	Glyco_trans_2_3	211	224	8.8e-06	26.4
TkA04G023170	`PF03552`	Cellulose_synt	284	1019		1353.5
TkA04G023170	`PF13632`	Glyco_trans_2_3	518	571	8.8e-06	26.4
TkA04G023170	`PF14570`	zf-RING_4	585	599	0.013	16.0
TkA04G023170	`PF13632`	Glyco_trans_2_3	717	823	8.8e-06	26.4
TkA04G023170	`PF13564`	DoxX_2	805	864	0.13	13.2
TkA04G023170	`PF13632`	Glyco_trans_2_3	953	988	8.8e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84JA6`	Arabidopsis thaliana	sp\|Q84JA6\|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP-forming]	79.700%	Swiss-Prot	High
`Q9AV71`	Oryza sativa subsp. japonica	sp\|Q9AV71\|CESA7_ORYSJ Cellulose synthase A catalytic subunit 7 [UDP-forming]	76.300%	Swiss-Prot	High
`A2XNT2`	Oryza sativa subsp. indica	sp\|A2XNT2\|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming]	64.800%	Swiss-Prot	High
`Q851L8`	Oryza sativa subsp. japonica	sp\|Q851L8\|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming]	64.800%	Swiss-Prot	High
`Q69V23`	Oryza sativa subsp. japonica	sp\|Q69V23\|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming]	64.800%	Swiss-Prot	High
`Q6YVM4`	Oryza sativa subsp. japonica	sp\|Q6YVM4\|CESA6_ORYSJ Probable cellulose synthase A catalytic subunit 6 [UDP-forming]	76.100%	Swiss-Prot	High

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