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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G019630
Reference: TK1151 Chr: Chr04 Coordinates: 4907922-4910423 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1639 bp · TkA04G019630|TK1151|cDNA

CACCTCTTTAGGTGTCAATCTCTCATCCACCTTCCTCTCCTTTAAAACCCACCTCCACCACCATCACAATCCACCATCACAACCACCATGGCTAAGTTTCTCTCTCTTTCTCTAACCTTCCTCGTCGTCTTCCATGGCTGCCTCGCTCTCCGCCCTTTCCAGCAACAGCAACAAGACCAATGCCAGATTCAACGAATCAACGCCCTTGAACCCAACGAGCGAGTTCAATCCGAAGCTGGGTGGACCGATTTCTTTGATTC...

CDS

Download CDS FASTA

1419 bp · TkA04G019630|TK1151|CDS

ATGGCTAAGTTTCTCTCTCTTTCTCTAACCTTCCTCGTCGTCTTCCATGGCTGCCTCGCTCTCCGCCCTTTCCAGCAACAGCAACAAGACCAATGCCAGATTCAACGAATCAACGCCCTTGAACCCAACGAGCGAGTTCAATCCGAAGCTGGGTGGACCGATTTCTTTGATTCCAGCAACCAGCAGTTCCAGTGTGCCGGAGTAGAAGTCATCCGCCACCATATTCAGCCTCAAGGACTCCTCTTACCTTCTTACATCAA...

Protein

Download Protein FASTA

472 aa · TkA04G019630|TK1151|PROTEIN

MAKFLSLSLTFLVVFHGCLALRPFQQQQQDQCQIQRINALEPNERVQSEAGWTDFFDSSNQQFQCAGVEVIRHHIQPQGLLLPSYINTPLMVYILQGRGYQGTMMPGCAETFQSSQQLQEGSGSSFQDRHQKIRHFQQGDVVVIPAGAAHWMYNDGQEEIIAVTLLDSTNSANQLDQFHRRFFLAGNPQQGQQQQQQGGRSWGRSQKRQSGQSQEEGAGNIFQGFDLEMLAEVFNVDQETAEKLQSPQDNRGHIVKVERG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G019630
TK1151 IDTkA04G019630
OH-1004 IDLXL04_036872
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G019630
LocationChr04:4907922-4910423 (-)
DescriptionSimilar to 11S globulin
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010431 seed maturation Biological Process
GO:0048316 seed development Biological Process
GO:0070207 protein homotrimerization Biological Process
GO:0043245 extraorganismal space Cellular Component
GO:0019863 IgE binding Molecular Function
GO:0019864 IgG binding Molecular Function
GO:0045735 nutrient reservoir activity Molecular Function
KEGG gene cross-reference
ghi:107916455
jre:108996042
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.509
Rank 1 · TkA04G019630 · TK1151
Endoplasmic reticulum0.255
Rank 2 · TkA04G019630 · TK1151
Extracellular0.231
Rank 3 · TkA04G019630 · TK1151
Cytoplasm0.134
Rank 4 · TkA04G019630 · TK1151
Cell membrane0.062
Rank 5 · TkA04G019630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04618HD-ZIP_N19-63 aa
PF00190Cupin_138-189 aa
PF07883Cupin_291-99 aa
PF04618HD-ZIP_N110-146 aa
PF05899Cupin_3127-148 aa
PF22200ExsA_N130-149 aa
PF12852Cupin_6132-165 aa
PF07883Cupin_2135-162 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G019630PF04618HD-ZIP_N19630.4711.7
TkA04G019630PF00190Cupin_1381891.5e-64216.9
TkA04G019630PF07883Cupin_291995.7e-0523.5
TkA04G019630PF04618HD-ZIP_N1101460.4711.7
TkA04G019630PF05899Cupin_31271480.003517.7
TkA04G019630PF22200ExsA_N1301490.03815.1
TkA04G019630PF12852Cupin_61321650.01615.7
TkA04G019630PF07883Cupin_21351625.7e-0523.5
TkA04G019630PF03079ARD1361660.01716.0
TkA04G019630PF04618HD-ZIP_N1842420.4711.7
TkA04G019630PF00190Cupin_12142411.5e-64216.9
TkA04G019630PF12852Cupin_62632920.01615.7
TkA04G019630PF00190Cupin_12974441.5e-64216.9
TkA04G019630PF12852Cupin_63313910.01615.7
TkA04G019630PF22200ExsA_N3534270.03815.1
TkA04G019630PF07883Cupin_23553915.7e-0523.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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