TkA04G019250 | RubberDandelionOmics

Gene overview

TkA04G019250

Reference: TK1151 Chr: Chr04 Coordinates: 4826607-4828226 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1494 bp · TkA04G019250|TK1151|cDNA

ATGGCGGGTGATCAACTCCAAGTGCTTCACGCACTCGATCTCGCGAAAACACAATGGTACCATTTCACCGCAATCATAATCGCTGGAATGGGGTTTTTCACAGATGCATACGATCTCTTTTGCATATCACTCGTCACGAAATTACTCGGCCGAATTTATTACCACGTGGAGGGCCACCCAAATCCGGGCACGTTGCCGCCCAAGGTCGCGGCGGCGGTCAACAGTGTCGCGTTTTGCGGAACGTTAACCGGTCAACTCTT...

CDS

Download CDS FASTA

1494 bp · TkA04G019250|TK1151|CDS

ATGGCGGGTGATCAACTCCAAGTGCTTCACGCACTCGATCTCGCGAAAACACAATGGTACCATTTCACCGCAATCATAATCGCTGGAATGGGGTTTTTCACAGATGCATACGATCTCTTTTGCATATCACTCGTCACGAAATTACTCGGCCGAATTTATTACCACGTGGAGGGCCACCCAAATCCGGGCACGTTGCCGCCCAAGGTCGCGGCGGCGGTCAACAGTGTCGCGTTTTGCGGAACGTTAACCGGTCAACTCTT...

Protein

Download Protein FASTA

497 aa · TkA04G019250|TK1151|PROTEIN

MAGDQLQVLHALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGHPNPGTLPPKVAAAVNSVAFCGTLTGQLFFGWLGDKMGRKKVYGMTLMIMVICSIASGLSFSNDPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILVGGIFAIIVSSAFKAKYNVPPYVTDAHRSTPHQADYIWRIILMFGAAPAGLTYYWRMKMPETARYTALVAKNGEKAAADMGRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G019250`
TK1151 ID	TkA04G019250
OH-1004 ID	LXL04_036875
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G019250

Location Chr04:4826607-4828226 (+)

Description Similar to PHT1-7: Probable inorganic phosphate transporter 1-7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38940`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At3g54700`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0444700`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036875 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0080187 floral organ senescence Biological Process

GO:1901684 arsenate ion transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT2G38940

ath:AT3G54700

ath:AT5G43350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.773

Rank 1 · TkA04G019250 · TK1151

Cytoplasm0.139

Rank 2 · TkA04G019250 · TK1151

Endoplasmic reticulum0.077

Rank 3 · TkA04G019250 · TK1151

Lysosome / Vacuole0.061

Rank 4 · TkA04G019250 · TK1151

Golgi apparatus0.048

Rank 5 · TkA04G019250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr26-451 aa

PF07690MFS_165-454 aa

PF06779MFS_468-192 aa

PF03137OATP74-114 aa

PF03137OATP127-190 aa

PF06342DUF1057246-288 aa

PF00083Sugar_tr456-471 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G019250	`PF00083`	Sugar_tr	26	451	3e-46	159.0
TkA04G019250	`PF07690`	MFS_1	65	454	2e-23	83.6
TkA04G019250	`PF06779`	MFS_4	68	192	1.3e-05	25.4
TkA04G019250	`PF03137`	OATP	74	114	7.4	5.4
TkA04G019250	`PF03137`	OATP	127	190	7.4	5.4
TkA04G019250	`PF06342`	DUF1057	246	288	0.041	13.7
TkA04G019250	`PF00083`	Sugar_tr	456	471	3e-46	159.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96303`	Arabidopsis thaliana	sp\|Q96303\|PHT14_ARATH Inorganic phosphate transporter 1-4	73.700%	Swiss-Prot	High
`Q494P0`	Arabidopsis thaliana	sp\|Q494P0\|PHT17_ARATH Probable inorganic phosphate transporter 1-7	74.800%	Swiss-Prot	High
`Q8H6G8`	Oryza sativa subsp. japonica	sp\|Q8H6G8\|PHT18_ORYSJ Probable inorganic phosphate transporter 1-8	71.200%	Swiss-Prot	High

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