LXL04_036875 | RubberDandelionOmics

Gene overview

LXL04_036875

Reference: OH-1004 Chr: Chr08 Coordinates: 49636443-49638062 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1620 bp · LXL04_036875|LXL04_036875|OH1004|cDNA

ATGGCGGGTGATCAACTCCAAGTGCTTCACGCACTCGATCTCGCGAAAACACAATGGTACCATTTCACCGCAATCATAATCGCTGGAATGGGGTTTTTCACAGATGCATACGATCTCTTTTGCATATCACTCGTCACGAAATTACTCGGCCGAATTTATTACCACGTGGAGGGCCACCCAAATCCGGGCACGTTGCCGCCCAAGGTCGCGGCGGCGGTCAACAGTGTCGCGTTTTGCGGAACGTTAACCGGTCAACTCTT...

CDS

Download CDS FASTA

1620 bp · LXL04_036875|LXL04_036875|OH1004|CDS

ATGGCGGGTGATCAACTCCAAGTGCTTCACGCACTCGATCTCGCGAAAACACAATGGTACCATTTCACCGCAATCATAATCGCTGGAATGGGGTTTTTCACAGATGCATACGATCTCTTTTGCATATCACTCGTCACGAAATTACTCGGCCGAATTTATTACCACGTGGAGGGCCACCCAAATCCGGGCACGTTGCCGCCCAAGGTCGCGGCGGCGGTCAACAGTGTCGCGTTTTGCGGAACGTTAACCGGTCAACTCTT...

Protein

Download Protein FASTA

539 aa · LXL04_036875|LXL04_036875|OH1004|PROTEIN

MAGDQLQVLHALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGHPNPGTLPPKVAAAVNSVAFCGTLTGQLFFGWLGDKMGRKKVYGMTLMIMVICSIASGLSFSNDPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILVGGIFAIIVSSAFKAKYNVPPYVTDAHRSTPHQADYIWRIILMFGAAPAGLTYYWRMKMPETARYTALVAKNGEKAAADMGRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036875`
TK1151 ID	TkA04G019250
OH-1004 ID	LXL04_036875
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036875

Location Chr08:49636443-49638062 (-)

Description Similar to PHT1-7: Probable inorganic phosphate transporter 1-7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54700`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At2g38940`	High-affinity transporter for external inorganic phosphate.	No verified direct reference in this release
`At5g43350`	High-affinity transporter for external inorganic phosphate.	Phosphate transport in Arabidopsis: Pht1;1 and Pht1;4 play a major role in phosphate acquisition from both low- and high-phosphate environments.2004 · DOI: 10.1111/j.1365-313x.2004.02161.x Overexpression of an Arabidopsis thaliana high-affinity phosphate transporter gene in tobacco cultured cells enhances cell growth under phosphate-limited conditions.1997 · DOI: 10.1073/pnas.94.13.7098

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036875 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006817 phosphate ion transport Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0080187 floral organ senescence Biological Process

GO:1901684 arsenate ion transmembrane transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT2G38940

ath:AT3G54700

ath:AT5G43350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.765

Rank 1 · LXL04_036875 · OH-1004

Cytoplasm0.142

Rank 2 · LXL04_036875 · OH-1004

Endoplasmic reticulum0.075

Rank 3 · LXL04_036875 · OH-1004

Lysosome / Vacuole0.066

Rank 4 · LXL04_036875 · OH-1004

Golgi apparatus0.050

Rank 5 · LXL04_036875 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr26-513 aa

PF07690.22MFS_165-457 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036875	`PF00083.31`	Sugar_tr	26	513	2.8e-52	178.9
LXL04_036875	`PF07690.22`	MFS_1	65	457	6.2e-25	88.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q494P0`	Arabidopsis thaliana	Probable inorganic phosphate transporter 1-7	80.806%	Swiss-Prot	strong database homology
`Q96303`	Arabidopsis thaliana	Inorganic phosphate transporter 1-4	80.233%	Swiss-Prot	strong database homology
`Q8VYM2`	Arabidopsis thaliana	Inorganic phosphate transporter 1-1	76.864%	Swiss-Prot	strong database homology

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