TkA04G016470 | RubberDandelionOmics

Gene overview

TkA04G016470

Reference: TK1151 Chr: Chr04 Coordinates: 4093674-4096406 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1169 bp · TkA04G016470|TK1151|cDNA

GCTATATCACTAATTTCCTGGTGAAAAAGCACAAGGGAACGAAGGCGAAAAGAAGAGGAAAAAACAGCAAGAATCTCTCCCAATCGTATCCGCCGTCCGCCGGATCTGCATTCTGTAGAGATGAGTAAGAAGAAAAACCCTAACGTGTTCCTGGATTTATCAATAGATGGAAGTCCTGCAGAAAGAATTGTCATCGAGCTTTTTGCCGATATTGTCCCTAGAACAGCTGAGAACTTTCGAGCTCTTTGCACAGGGGAGAA...

CDS

Download CDS FASTA

642 bp · TkA04G016470|TK1151|CDS

ATGAGTAAGAAGAAAAACCCTAACGTGTTCCTGGATTTATCAATAGATGGAAGTCCTGCAGAAAGAATTGTCATCGAGCTTTTTGCCGATATTGTCCCTAGAACAGCTGAGAACTTTCGAGCTCTTTGCACAGGGGAGAAGGGAATTGGAAGCACTACTGGAAAACCATTACACTACAAGGGAATCATATTCCATCGCATTATTAAAGGCTTCATGGCTCAAGGAGGCGATTTCTCGAAACAAAATGGCACTGGTGGGGA...

Protein

Download Protein FASTA

213 aa · TkA04G016470|TK1151|PROTEIN

MSKKKNPNVFLDLSIDGSPAERIVIELFADIVPRTAENFRALCTGEKGIGSTTGKPLHYKGIIFHRIIKGFMAQGGDFSKQNGTGGESIYGGKFADENFKVDHSGPGMLSMANGGPNTNGSQFFILFKRQPHLDGKHVVFGKVTMGMDTIKKIEQLGTADGKPNGLVKIVDCGEVSEDKKNNVVEPTKGKKKKTGKKDISSSFLMMMIVQMGE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G016470`
TK1151 ID	TkA04G016470
OH-1004 ID	LXL04_019681
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	63.800
Protein coverage (%)	TK1151 81.690 / OH-1004 44.246 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G016470

Location Chr04:4093674-4096406 (+)

Description Similar to CYP19-2: Peptidyl-prolyl cis-trans isomerase CYP19-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63400`	PPIases accelerate the folding of proteins.	No verified direct reference in this release
`At4g34870`	PPIases accelerate the folding of proteins.	No verified direct reference in this release
`At2g21130`	PPIases accelerate the folding of proteins.	No verified direct reference in this release
`At4g38740`	PPIases accelerate the folding of proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019681 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010555 response to mannitol Biological Process

GO:0061083 regulation of protein refolding Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:1902074 response to salt Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003755 peptidyl-prolyl cis-trans isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT2G21130

gmx:106795232

sly:100736432

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.519

Rank 1 · TkA04G016470 · TK1151

Nucleus0.415

Rank 2 · TkA04G016470 · TK1151

Mitochondrion0.107

Rank 3 · TkA04G016470 · TK1151

Cell membrane0.068

Rank 4 · TkA04G016470 · TK1151

Endoplasmic reticulum0.061

Rank 5 · TkA04G016470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00160Pro_isomerase11-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G016470	`PF00160`	Pro_isomerase	11	173	5.1e-48	164.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LY75`	Arabidopsis thaliana	sp\|Q9LY75\|CYP63_ARATH Peptidyl-prolyl cis-trans isomerase CYP63	74.000%	Swiss-Prot	High
`Q42406`	Arabidopsis thaliana	sp\|Q42406\|CP18D_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-4	64.300%	Swiss-Prot	High
`Q9SKQ0`	Arabidopsis thaliana	sp\|Q9SKQ0\|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2	63.700%	Swiss-Prot	High
`P34790`	Arabidopsis thaliana	sp\|P34790\|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3	64.100%	Swiss-Prot	High

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