Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1686 bp · TkA04G014060|TK1151|cDNA
GAATATACTTGTGGATTTTCTCCGTTTTTTGCGATGTATTAAGTCGTCTGATATTACCTCTCTTGCAAAAACATATCGGAATCCACTCTAATATAAAAAATTAAAAAACAAAACCTACAAAAAATTGCCCCTCTTCTTCACAGGCACTTCGCCTCTATCTCTCGATAAATTACGAAGAAAATCTGCGCCAAATCTTCGTTTCTCAAGTTCTTTGAAGATCGCAAGATTATCCATTCCAAATGCCTGAACTCATTGAAGGT...
1032 bp · TkA04G014060|TK1151|CDS
ATGCCTGAACTCATTGAAGGTCTCCCTGATGCTGTAGCTATAAGATGTCTTGCGCGGGTCCCATACCGGCTTTTCCCAAAACTAGAAACCGTTTGTCATTCATGGAGGGATGCAATTCGCAGCAATGAACTAGTCAAAGCCCGTGAAGAAGTCAACTCAACCGAAGACTTTTTATGTGTATCCGCATTTGACCCCGAAAACATCTGGCAAATCTTCGATCCAAATCGTGCAATTTGGATCACTCTCCCTATCCTTCCATC...
Protein
Download Protein FASTA343 aa · TkA04G014060|TK1151|PROTEIN
MPELIEGLPDAVAIRCLARVPYRLFPKLETVCHSWRDAIRSNELVKAREEVNSTEDFLCVSAFDPENIWQIFDPNRAIWITLPILPSKVKNLTNFGVVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEVWAYDPVLRRWSSRAAMVVPRAMFACCVVNGKILVAGGFTTCRKSIAKSELYDPETDTWAPIPDLNYTHNSACSGVVLGGEVHVVHKGLTTVQVLKKDMWWVHEHAWVHGPMTVVNGSLYVMTHGVIYKQE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G014060 |
|---|---|
| TK1151 ID | TkA04G014060 |
| OH-1004 ID | LXL04_036955 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G014060 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:3523085-3525490 (-) | |||||||||
| Description | Similar to SKIP30: F-box/kelch-repeat protein SKIP30 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006995 cellular response to nitrogen starvation Biological Process GO:0016567 protein ubiquitination Biological Process GO:2000762 regulation of phenylpropanoid metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G16250 ath:AT1G27420 ath:AT1G55270 ath:AT1G67480 ath:AT3G63220 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00646F-box6-44 aaPF12937F-box-like6-44 aaPF01344Kelch_160-69 aaPF25210Kelch_FKB9565-112 aaPF24681Kelch_KLHDC2_KLHL20_DRC770-194 aaPF01344Kelch_171-85 aaPF13415Beta-prop_FBX4272-232 aaPF24981Beta-prop_ATRN-LZTR172-191 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G014060 | PF00646 | F-box | 6 | 44 | 0.00076 | 20.0 |
| TkA04G014060 | PF12937 | F-box-like | 6 | 44 | 0.1 | 13.1 |
| TkA04G014060 | PF01344 | Kelch_1 | 60 | 69 | 1.8e-21 | 76.0 |
| TkA04G014060 | PF25210 | Kelch_FKB95 | 65 | 112 | 2e-18 | 67.7 |
| TkA04G014060 | PF24681 | Kelch_KLHDC2_KLHL20_DRC7 | 70 | 194 | 6.7e-11 | 42.6 |
| TkA04G014060 | PF01344 | Kelch_1 | 71 | 85 | 1.8e-21 | 76.0 |
| TkA04G014060 | PF13415 | Beta-prop_FBX42 | 72 | 232 | 1.1e-10 | 42.2 |
| TkA04G014060 | PF24981 | Beta-prop_ATRN-LZTR1 | 72 | 191 | 6.8e-08 | 32.8 |
| TkA04G014060 | PF13964 | Beta-prop_Calicin | 78 | 199 | 1.3e-13 | 51.4 |
| TkA04G014060 | PF13418 | Beta-prop_TYW4 | 91 | 110 | 5.9e-05 | 23.8 |
| TkA04G014060 | PF01344 | Kelch_1 | 93 | 146 | 1.8e-21 | 76.0 |
| TkA04G014060 | PF07646 | Kelch_2 | 101 | 146 | 1.8e-14 | 53.6 |
| TkA04G014060 | PF13964 | Beta-prop_Calicin | 119 | 210 | 1.3e-13 | 51.4 |
| TkA04G014060 | PF25210 | Kelch_FKB95 | 126 | 273 | 2e-18 | 67.7 |
| TkA04G014060 | PF13418 | Beta-prop_TYW4 | 126 | 295 | 5.9e-05 | 23.8 |
| TkA04G014060 | PF01344 | Kelch_1 | 149 | 195 | 1.8e-21 | 76.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.