TkA04G013830 | RubberDandelionOmics

Gene overview

TkA04G013830

Reference: TK1151 Chr: Chr04 Coordinates: 3457495-3459122 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1383 bp · TkA04G013830|TK1151|cDNA

TTTAAATACGACACCTTCTTCTTCTATATTTTCTCTCTCCTTATCTTCTTTTGAAAAGCATCAATCCATGACAACCAAAGGAAAACCTCTCTCTCACACTCTTCTCTCTCTCTCTCAGATGCTAATCGGGTCGGCATTTTGAAAGAAAGATTAAATGGGGAGATTGAATCTGAGAAAATCTAATCTCAATTTTGTCACAAACACCTGGGTTTTGATTCGAATCACTTCTTGTTTTTCTTGATCTCTCATTCTCCCTTTCT...

CDS

Download CDS FASTA

837 bp · TkA04G013830|TK1151|CDS

ATGTTAGTGATGCTGAGGAACAGATCCAGAGCTGTAACGAAACAATCACCGATCATGGCGGATCACCAAGCTTCGCCTCTTTCACCGCCTACCTCCCAGAACCCAACCCGATCCATTTCATATTTTCTCGGTTCTCCGAGGTTCTTCAATGGCGGATTGTTGCCGAAAAGTCTTTCACCGACCTCCATTCTCGATACGAAAAAACAGTTATGCAATTTTGCCGGTAATCCATTTGGATTCAGTAAAATCCCCAAAAAACC...

Protein

Download Protein FASTA

278 aa · TkA04G013830|TK1151|PROTEIN

MLVMLRNRSRAVTKQSPIMADHQASPLSPPTSQNPTRSISYFLGSPRFFNGGLLPKSLSPTSILDTKKQLCNFAGNPFGFSKIPKKPTKIVEKIKHPAENFGSEGIALALVLIDENSNNNICKPKTTTRKLLSGSKLKIQIPKPFPNASPESPGDFGIKSRNSQFSAAPTPTGFGSPNIFTGPLSLSEMELSEEYTRVIAHGPNPKTTHIYDNCVVESYCGFRVGSEAPLESFVSFCNTCKKKLGEGSDIFMYRGEKAFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G013830`
TK1151 ID	TkA04G013830
OH-1004 ID	LXL04_036956
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G013830

Location Chr04:3457495-3459122 (-)

Description Similar to FLZ8: FCS-Like Zinc finger 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22550`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At3g63210`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	A novel zinc-finger protein with a proline-rich domain mediates ABA-regulated seed dormancy in Arabidopsis.2004 · DOI: 10.1023/b:plan.0000028730.10834.e3
`At2g25690`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g11460`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036956 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0010162 seed dormancy process Biological Process

GO:0042594 response to starvation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090351 seedling development Biological Process

GO:1902074 response to salt Biological Process

GO:1905582 response to mannose Biological Process

GO:0000932 P-body Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G25690

ath:AT2G44670

ath:AT3G22550

ath:AT3G63210

ath:AT5G11460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.566

Rank 1 · TkA04G013830 · TK1151

Cytoplasm0.489

Rank 2 · TkA04G013830 · TK1151

Cell membrane0.090

Rank 3 · TkA04G013830 · TK1151

Endoplasmic reticulum0.053

Rank 4 · TkA04G013830 · TK1151

Mitochondrion0.024

Rank 5 · TkA04G013830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10367zf-Vps39_C197-210 aa

PF04570zf-FLZ227-272 aa

PF10367zf-Vps39_C235-253 aa

PF25868Fn1_3242-268 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G013830	`PF10367`	zf-Vps39_C	197	210	0.15	12.4
TkA04G013830	`PF04570`	zf-FLZ	227	272	6.8e-21	74.2
TkA04G013830	`PF10367`	zf-Vps39_C	235	253	0.15	12.4
TkA04G013830	`PF25868`	Fn1_3	242	268	0.38	10.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L471`	Arabidopsis thaliana	sp\|Q8L471\|FLZ8_ARATH FCS-Like Zinc finger 8	38.900%	Swiss-Prot	Medium
`Q8LGS1`	Arabidopsis thaliana	sp\|Q8LGS1\|MARD1_ARATH Protein MARD1	35.800%	Swiss-Prot	Medium
`Q9SL94`	Arabidopsis thaliana	sp\|Q9SL94\|FLZ11_ARATH FCS-Like Zinc finger 11	49.500%	Swiss-Prot	Low
`Q9LYE4`	Arabidopsis thaliana	sp\|Q9LYE4\|FLZ10_ARATH FCS-Like Zinc finger 10	47.700%	Swiss-Prot	Low
`O80506`	Arabidopsis thaliana	sp\|O80506\|FLZ3_ARATH FCS-Like Zinc finger 3	53.700%	Swiss-Prot	Low

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