LXL04_036956 | RubberDandelionOmics

Gene overview

LXL04_036956

Reference: OH-1004 Chr: Chr08 Coordinates: 50862930-50864011 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

837 bp · LXL04_036956|LXL04_036956|OH1004|cDNA

ATGTTAGTGATGCTGAGGAACAGATCCAGAGCTGTAACGAAACAATCACCGATCATGGCGGATCACCAAGCTTCGCCTCTTTCACCGCCTACCTCCCAGAACCCAACCCGATCCATTTCATATTTTCTCGGTTCTCCGAGGTTCTTCAATGGCGGATTGTTGCCGAAAAGTCTTTCACCGACCTCCATTCTCGATACGAAAAAACAGTTATGCAATTTTGCCGGTAATCCATTTGGATTCAGTAAAACCCCCAAAAAACC...

CDS

Download CDS FASTA

837 bp · LXL04_036956|LXL04_036956|OH1004|CDS

ATGTTAGTGATGCTGAGGAACAGATCCAGAGCTGTAACGAAACAATCACCGATCATGGCGGATCACCAAGCTTCGCCTCTTTCACCGCCTACCTCCCAGAACCCAACCCGATCCATTTCATATTTTCTCGGTTCTCCGAGGTTCTTCAATGGCGGATTGTTGCCGAAAAGTCTTTCACCGACCTCCATTCTCGATACGAAAAAACAGTTATGCAATTTTGCCGGTAATCCATTTGGATTCAGTAAAACCCCCAAAAAACC...

Protein

Download Protein FASTA

278 aa · LXL04_036956|LXL04_036956|OH1004|PROTEIN

MLVMLRNRSRAVTKQSPIMADHQASPLSPPTSQNPTRSISYFLGSPRFFNGGLLPKSLSPTSILDTKKQLCNFAGNPFGFSKTPKKPTKIVEKIKHPAENFGSEGIALALVLIDENSNNNICKPKTTTRKLLSGSKLKIQIPKPFPNTSPESPGDFGIKSRNSQFSAAPTPTGFGSPNIFTGPLSLSEMELSEEYTRVIAHGPNPKTTHIYDNCVVESYCGFRVGSEAPLESFVSFCNTCKKKLGEGSDIFMYRGEKAFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036956`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036956

Location Chr08:50862930-50864011 (+)

Description Similar to FLZ8: FCS-Like Zinc finger 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22550`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At3g63210`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	A novel zinc-finger protein with a proline-rich domain mediates ABA-regulated seed dormancy in Arabidopsis.2004 · DOI: 10.1023/b:plan.0000028730.10834.e3
`At2g25690`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g11460`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036956 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0010162 seed dormancy process Biological Process

GO:0042594 response to starvation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090351 seedling development Biological Process

GO:1902074 response to salt Biological Process

GO:1905582 response to mannose Biological Process

GO:0000932 P-body Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G25690

ath:AT2G44670

ath:AT3G22550

ath:AT3G63210

ath:AT5G11460

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.566

Rank 1 · LXL04_036956 · OH-1004

Cytoplasm0.490

Rank 2 · LXL04_036956 · OH-1004

Cell membrane0.090

Rank 3 · LXL04_036956 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_036956 · OH-1004

Mitochondrion0.024

Rank 5 · LXL04_036956 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04570.21zf-FLZ227-272 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036956	`PF04570.21`	zf-FLZ	227	272	6.7e-21	74.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L471`	Arabidopsis thaliana	FCS-Like Zinc finger 8	39.583%	Swiss-Prot	moderate database homology
`Q8LGS1`	Arabidopsis thaliana	Protein MARD1	36.770%	Swiss-Prot	moderate database homology
`Q9SL94`	Arabidopsis thaliana	FCS-Like Zinc finger 11	49.541%	Swiss-Prot	weak database homology
`Q9LYE4`	Arabidopsis thaliana	FCS-Like Zinc finger 10	31.970%	Swiss-Prot	moderate database homology
`O80506`	Arabidopsis thaliana	FCS-Like Zinc finger 3	59.574%	Swiss-Prot	weak database homology

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