TkA04G009650 | RubberDandelionOmics

Gene overview

TkA04G009650

Reference: TK1151 Chr: Chr04 Coordinates: 2285507-2286507 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

363 bp · TkA04G009650|TK1151|cDNA

ATGGCTTCTAACACCATGGTGGATGTAAGACAGGGATTGGCTGTGGATACTCTAAATTCAATGATAGAGAATGGGGAAGGTTGCAGCTATGATTTTGCTTTTGTTGATGCTGAGAAAAGAATGTACCCTGAATACTTTGAGTTACTGCTAAAATTGGTGAGAGTAGGTGGTGTTATAGTAATTGATAATGTGCTTTGGCATGGAAAAGTTGCTGATCCTATGGTTAATGATAAGAAAACTGAGAGCATAAGAAGTTTCAA...

CDS

Download CDS FASTA

363 bp · TkA04G009650|TK1151|CDS

ATGGCTTCTAACACCATGGTGGATGTAAGACAGGGATTGGCTGTGGATACTCTAAATTCAATGATAGAGAATGGGGAAGGTTGCAGCTATGATTTTGCTTTTGTTGATGCTGAGAAAAGAATGTACCCTGAATACTTTGAGTTACTGCTAAAATTGGTGAGAGTAGGTGGTGTTATAGTAATTGATAATGTGCTTTGGCATGGAAAAGTTGCTGATCCTATGGTTAATGATAAGAAAACTGAGAGCATAAGAAGTTTCAA...

Protein

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120 aa · TkA04G009650|TK1151|PROTEIN

MASNTMVDVRQGLAVDTLNSMIENGEGCSYDFAFVDAEKRMYPEYFELLLKLVRVGGVIVIDNVLWHGKVADPMVNDKKTESIRSFNRALMEDKRVTISMVPWSNIGQEPVLVYWNALET

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G009650`
TK1151 ID	TkA04G009650
OH-1004 ID	LXL04_021058
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G009650

Location Chr04:2285507-2286507 (+)

Description Similar to omt5: Probable caffeoyl-CoA O-methyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26220`	Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021058 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0017000 antibiotic biosynthetic process Biological Process

GO:0032259 methylation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0008171 O-methyltransferase activity Molecular Function

GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function

GO:0042409 caffeoyl-CoA O-methyltransferase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ddi:DDB_G0275499

ddi:DDB_G0275501

hsa:118881

mmu:69156

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653

Rank 1 · TkA04G009650 · TK1151

Nucleus0.348

Rank 2 · TkA04G009650 · TK1151

Peroxisome0.075

Rank 3 · TkA04G009650 · TK1151

Mitochondrion0.060

Rank 4 · TkA04G009650 · TK1151

Endoplasmic reticulum0.050

Rank 5 · TkA04G009650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13578Methyltransf_245-64 aa

PF01596Methyltransf_36-102 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G009650	`PF13578`	Methyltransf_24	5	64	0.00041	22.0
TkA04G009650	`PF01596`	Methyltransf_3	6	102	1.1e-29	104.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5D7`	Arabidopsis thaliana	sp\|Q9C5D7\|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220	40.800%	Swiss-Prot	Medium

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