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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G007690
Reference: TK1151 Chr: Chr04 Coordinates: 1839299-1842053 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1584 bp · TkA04G007690|TK1151|cDNA

TAATGGGGCGCAAAAAAAGAGTTGGTTTTCTAGTTATATACAAAGAGAGAAGTGGATAAACGGTTGTCTTCCATGAGACCTCAATGGCTGTGATAAATCCCGCGCTCCGGCACCACCGTCACCACCACTACCACCACCACTCCTCCATCTCCCCAAATCAATCAATATCCTCCTTACTACTACTCCTCCGCAGAAAACCTACTTTCAATTCCCCCCAAAAGTCTCATTTTTCACCAATTTCCTGCTCTTCTTCAGCATCG...

CDS

Download CDS FASTA

1356 bp · TkA04G007690|TK1151|CDS

ATGGCTGTGATAAATCCCGCGCTCCGGCACCACCGTCACCACCACTACCACCACCACTCCTCCATCTCCCCAAATCAATCAATATCCTCCTTACTACTACTCCTCCGCAGAAAACCTACTTTCAATTCCCCCCAAAAGTCTCATTTTTCACCAATTTCCTGCTCTTCTTCAGCATCGCCGCCACCACCTTCCCCGACGCCGGAAGTTGGTTCCGAAACAGCAGAATCTTGCGTCAATTTAGGGCTCGCACTCTTCTCCAA...

Protein

Download Protein FASTA

451 aa · TkA04G007690|TK1151|PROTEIN

MAVINPALRHHRHHHYHHHSSISPNQSISSLLLLLRRKPTFNSPQKSHFSPISCSSSASPPPPSPTPEVGSETAESCVNLGLALFSKGRVKDALIQFETALTLNPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRVLPEFKQLQEEARVGGEDVGYGFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFLTFPRLFLAFKGGDGAPDILATSQNLAINIGGIVVFVALFLWDNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G007690
TK1151 IDTkA04G007690
OH-1004 IDLXL04_037052
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G007690
LocationChr04:1839299-1842053 (-)
DescriptionSimilar to LPA1: Protein LOW PSII ACCUMULATION 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g02910 Chaperone required for efficient photosystem II (PSII) assembly.
LOW PSII ACCUMULATION1 is involved in efficient assembly of photosystem II in Arabidopsis thaliana.2006 · DOI: 10.1105/tpc.105.037689

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037052 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0009611 response to wounding Biological Process
GO:0009644 response to high light intensity Biological Process
GO:0010206 photosystem II repair Biological Process
GO:0010207 photosystem II assembly Biological Process
GO:0010270 photosystem II oxygen evolving complex assembly Biological Process
GO:0015979 photosynthesis Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009523 photosystem II Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
KEGG gene cross-reference
ath:AT1G02910
ath:AT1G55480
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973
Rank 1 · TkA04G007690 · TK1151
Mitochondrion0.031
Rank 2 · TkA04G007690 · TK1151
Nucleus0.025
Rank 3 · TkA04G007690 · TK1151
Cytoplasm0.017
Rank 4 · TkA04G007690 · TK1151
Cell membrane0.012
Rank 5 · TkA04G007690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13374TPR_1073-102 aa
PF07719TPR_274-106 aa
PF00515TPR_174-106 aa
PF13181TPR_874-106 aa
PF13176TPR_776-105 aa
PF13424TPR_1278-139 aa
PF22316ABhydrolase-like_N78-168 aa
PF13432TPR_1679-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G007690PF13374TPR_10731020.01116.5
TkA04G007690PF07719TPR_2741064.9e-1142.6
TkA04G007690PF00515TPR_1741062.6e-1040.4
TkA04G007690PF13181TPR_8741061.5e-0525.5
TkA04G007690PF13176TPR_7761050.2712.2
TkA04G007690PF13424TPR_12781390.01416.2
TkA04G007690PF22316ABhydrolase-like_N781680.2611.9
TkA04G007690PF13432TPR_16791410.005917.7
TkA04G007690PF13174TPR_6791060.08414.3
TkA04G007690PF13428TPR_14801140.04215.3
TkA04G007690PF13414TPR_11811110.01116.1
TkA04G007690PF27626CNOT10_TPR1031400.2112.0
TkA04G007690PF07719TPR_21121414.9e-1142.6
TkA04G007690PF00515TPR_11131392.6e-1040.4
TkA04G007690PF13181TPR_81131391.5e-0525.5
TkA04G007690PF13374TPR_101131430.01116.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRY4Arabidopsis thalianasp|Q9SRY4|LPA1_ARATH Protein LOW PSII ACCUMULATION 1, chloroplastic74.500%Swiss-ProtHigh

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