TkA04G003240 | RubberDandelionOmics

Gene overview

TkA04G003240

Reference: TK1151 Chr: Chr04 Coordinates: 813593-813937 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

345 bp · TkA04G003240|TK1151|cDNA

ATGAAAGATTCATCCAGAAATCTTTTGTGGAAGAAAGTTATGGAAGCTCAAGTCAAGAAAACATGGTTAGGAGGTTGGAAAACGAAGATCGCAAGGAATAATACTAAAAAGATGAGAAAGCGTAGTAGACGGAGGGTGCGGCGGGCTGCTCACGGAGGACCCAGAAGGCCGGCTTCCATGGTTATTGAACGCAAGGTTCGAACGTTGAAGAAGCTTATCCCAAACGGGGAATCATCCGTCGGTTTGGATGGGCTGTTTAT...

CDS

Download CDS FASTA

345 bp · TkA04G003240|TK1151|CDS

ATGAAAGATTCATCCAGAAATCTTTTGTGGAAGAAAGTTATGGAAGCTCAAGTCAAGAAAACATGGTTAGGAGGTTGGAAAACGAAGATCGCAAGGAATAATACTAAAAAGATGAGAAAGCGTAGTAGACGGAGGGTGCGGCGGGCTGCTCACGGAGGACCCAGAAGGCCGGCTTCCATGGTTATTGAACGCAAGGTTCGAACGTTGAAGAAGCTTATCCCAAACGGGGAATCATCCGTCGGTTTGGATGGGCTGTTTAT...

Protein

Download Protein FASTA

114 aa · TkA04G003240|TK1151|PROTEIN

MKDSSRNLLWKKVMEAQVKKTWLGGWKTKIARNNTKKMRKRSRRRVRRAAHGGPRRPASMVIERKVRTLKKLIPNGESSVGLDGLFIETAEYISELQMRVRIMQAIVDALSSPE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G003240`
TK1151 ID	TkA04G003240
OH-1004 ID	LXL04_037102
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 85.075 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G003240

Location Chr04:813593-813937 (+)

Description Similar to UPB1: Transcription factor UPBEAT1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47270`	Transcription factor that modulates the balance between cellular proliferation and differentiation in root growth.	Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.2010 · DOI: 10.1016/j.cell.2010.10.020

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037102 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009646 response to absence of light Biological Process

GO:0030154 cell differentiation Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT2G47270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · TkA04G003240 · TK1151

Cytoplasm0.066

Rank 2 · TkA04G003240 · TK1151

Cell membrane0.019

Rank 3 · TkA04G003240 · TK1151

Plastid0.013

Rank 4 · TkA04G003240 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkA04G003240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22901`	Arabidopsis thaliana	sp\|O22901\|BH151_ARATH Transcription factor UPBEAT1	52.900%	Swiss-Prot	Low

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