Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2887 bp · TkA04G000430|TK1151|cDNA
TTTCGCTTGCCGCCTTTCAAGGCTTCCCGTAAATCGTAATGATGCCCTCATGTCAAAGCTGGACTAATTTGGACTTGGATGAATCGACAGTTGGGCCTGACTAAGTAACATATCCATTAGACGTGATTCAGATCTGCTGCCTCCTCTTTGATGATACCCTGGGAATGTGGCCCGAGTCGCCCAGCCCTGGCTATAAGTTCCCCCGAATGCTCATTCCCGCTTTCACGATTGAATTTCAGTCGCTTAGCTGCAACCATTAT...
2241 bp · TkA04G000430|TK1151|CDS
ATGAAGCCGCATATGGGAAGGCAGCTACATTTATTAGATGATCATATGAGTGGGAATTGGAGTTTGGGTAGTAATTACCATCCGTGTAGCCAATCAAGGAAGATATCAATAGGAGTGGTGGTTGATTCTGCTGCCAAAACAAAATGCAACAATGGTAAGGGAGTTGTGACCGAGTTGCAAACTTCACAAAATGTAACATCAGCAAAAGATTTTCCTGCAGAAAGGAAACATAAAGGGAAAGAAGTCATATCTCCAGATTT...
Protein
Download Protein FASTA746 aa · TkA04G000430|TK1151|PROTEIN
MKPHMGRQLHLLDDHMSGNWSLGSNYHPCSQSRKISIGVVVDSAAKTKCNNGKGVVTELQTSQNVTSAKDFPAERKHKGKEVISPDLGTQNEAPCQEPVHANTYFQNISHPDTISHPKLVSSLPSTSNVLLQASGKKIVSEKDPGSNFASQMFNLHGKNANEENSKRNTYQSEGGNQDVIGREEESSYVTPQKLIVPEKVITEQGTSERGNSGHVTLRMKVQELLGTVYSPSKKQYNSETFPMDVNNSKPTSKTNKTDSQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G000430 |
|---|---|
| TK1151 ID | TkA04G000430 |
| OH-1004 ID | LXL04_037142 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.200 |
| Protein coverage (%) | TK1151 99.866 / OH-1004 87.982Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G000430 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:104818-109271 (+) | ||||||||||||
| Description | Similar to ASY3: Meiosis-specific protein ASY3 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0007129 homologous chromosome pairing at meiosis Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0090173 regulation of synaptonemal complex assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005730 nucleolus Cellular Component GO:0009507 chloroplast Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT2G46980 dosa:Os10g0405500 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF20435ASY3-like16-365 aaPF00423HN89-111 aaPF20435ASY3-like560-742 aaPF00423HN586-672 aaPF09177STX6_10_61_N593-625 aaPF02601Exonuc_VII_L603-723 aaPF09177STX6_10_61_N608-700 aaPF25450Rab11-FIP3615-732 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G000430 | PF20435 | ASY3-like | 16 | 365 | 1.7e-51 | 176.1 |
| TkA04G000430 | PF00423 | HN | 89 | 111 | 0.073 | 12.3 |
| TkA04G000430 | PF20435 | ASY3-like | 560 | 742 | 1.7e-51 | 176.1 |
| TkA04G000430 | PF00423 | HN | 586 | 672 | 0.073 | 12.3 |
| TkA04G000430 | PF09177 | STX6_10_61_N | 593 | 625 | 5.8 | 8.2 |
| TkA04G000430 | PF02601 | Exonuc_VII_L | 603 | 723 | 0.12 | 12.5 |
| TkA04G000430 | PF09177 | STX6_10_61_N | 608 | 700 | 5.8 | 8.2 |
| TkA04G000430 | PF25450 | Rab11-FIP3 | 615 | 732 | 0.4 | 11.7 |
| TkA04G000430 | PF26740 | DUF8246 | 639 | 724 | 1.2 | 9.7 |
| TkA04G000430 | PF09177 | STX6_10_61_N | 658 | 716 | 5.8 | 8.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.