TkA04G000020 | RubberDandelionOmics

Gene overview

TkA04G000020

Reference: TK1151 Chr: Chr04 Coordinates: 6953-9288 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

975 bp · TkA04G000020|TK1151|cDNA

ATGGAAATTATCGAAGAAGAGGAGCAAGAAGAGGCCGAAAGTTCGACGAGGAGGACACGCAAAAAAATTGTTAGAGATCGTATGGCCGCAAGCGATCGTTTGATGGCACATTATTTCAACGACAATGCTGTTTACGGTCCTACGATCTTCCGTCGTCGTTTTCGAATGCACAAGCCGTTGTTTCAACGTATTGTGAACGACATAGAGAATGTTTCTAGTTTCATCAGGCAAGGTTGTGATGCTCGAGGTGCTGAAGGGTT...

CDS

Download CDS FASTA

975 bp · TkA04G000020|TK1151|CDS

ATGGAAATTATCGAAGAAGAGGAGCAAGAAGAGGCCGAAAGTTCGACGAGGAGGACACGCAAAAAAATTGTTAGAGATCGTATGGCCGCAAGCGATCGTTTGATGGCACATTATTTCAACGACAATGCTGTTTACGGTCCTACGATCTTCCGTCGTCGTTTTCGAATGCACAAGCCGTTGTTTCAACGTATTGTGAACGACATAGAGAATGTTTCTAGTTTCATCAGGCAAGGTTGTGATGCTCGAGGTGCTGAAGGGTT...

Protein

Download Protein FASTA

324 aa · TkA04G000020|TK1151|PROTEIN

MEIIEEEEQEEAESSTRRTRKKIVRDRMAASDRLMAHYFNDNAVYGPTIFRRRFRMHKPLFQRIVNDIENVSSFIRQGCDARGAEGFTSIQKCAAAIRQLAYSNVSDSWDEYFQMSERVVRESLEEFCEFQGQFTIGGKKHPTLVLEVVASQDLWIWHAYFGSFTLRDRYYRYMYYLVDGIYPNYAVFAKPLRYPGDERRARYATMQEKARKDIERCFGLHIPTDSPARSKDKANIENIMYTCIILHNMILEDEGKTICT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G000020`
TK1151 ID	TkA04G000020
OH-1004 ID	LXL04_017125
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	46.000
Protein coverage (%)	TK1151 94.444 / OH-1004 33.874 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA04G000020`
Location	Chr04:6953-9288 (-)
Description	Similar to OM64: Outer envelope protein 64, mitochondrial
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017125` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006626 protein targeting to mitochondrion Biological Process GO:0009684 indoleacetic acid biosynthetic process Biological Process GO:0009851 auxin biosynthetic process Biological Process GO:0015031 protein transport Biological Process GO:0030150 protein import into mitochondrial matrix Biological Process GO:0005576 extracellular region Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005741 mitochondrial outer membrane Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference	ath:AT1G08980 ath:AT3G17970 ath:AT5G09420 dosa:Os04g0118100 osa:4334958 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.941

Rank 1 · TkA04G000020 · TK1151

Cytoplasm0.171

Rank 2 · TkA04G000020 · TK1151

Mitochondrion0.015

Rank 3 · TkA04G000020 · TK1151

Cell membrane0.014

Rank 4 · TkA04G000020 · TK1151

Extracellular0.012

Rank 5 · TkA04G000020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28509DUF841832-69 aa

PF04185Phosphoesterase101-172 aa

PF04827Plant_tran129-163 aa

PF04827Plant_tran164-256 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G000020	`PF28509`	DUF8418	32	69	1e-17	64.3
TkA04G000020	`PF04185`	Phosphoesterase	101	172	0.22	11.4
TkA04G000020	`PF04827`	Plant_tran	129	163	3.4e-37	128.8
TkA04G000020	`PF04827`	Plant_tran	164	256	3.4e-37	128.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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