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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G594350
Reference: TK1151 Chr: Chr03 Coordinates: 150940500-150941452 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

649 bp · TkA03G594350|TK1151|cDNA

TCTCCCACTCGTGAATTCAATTTCCTATCTGTATATATAGACATCCATGTATGTATATGCATACATATATTTCATAGCTCGGGTTTCATCATAACAAAGATGGGAGCTCAGGTTTCATCACAACAAAGATCAGACAATGGAAAAGTAGTTTCGGTTCATTCTTTAGATAACTGGAAGACACAATTTCAAAACTCTAGAACGTCCAACAAACTGATGGTGGTTGATTTCTCAGCAGGTTGGTGTGGTCCTTGCAAGTTTAT...

CDS

Download CDS FASTA

468 bp · TkA03G594350|TK1151|CDS

TCTCCCACTCGTGAATTCAATTTCCTATCTGTATATATAGACATCCATGTATGTATATGCATACATATATTTCATAGCTCGGGTTTCATCATAACAAAGATGGGAGCTCAGGTTTCATCACAACAAAGATCAGACAATGGAAAAGTAGTTTCGGTTCATTCTTTAGATAACTGGAAGACACAATTTCAAAACTCTAGAACGTCCAACAAACTGATGGTGGTTGATTTCTCAGCAGGTTGGTGTGGTCCTTGCAAGTTTAT...

Protein

Download Protein FASTA

155 aa · TkA03G594350|TK1151|PROTEIN

SPTREFNFLSVYIDIHVCICIHIFHSSGFIITKMGAQVSSQQRSDNGKVVSVHSLDNWKTQFQNSRTSNKLMVVDFSAGWCGPCKFIEPAVHDLAVEFSDVEFIKIDVDELPDVAKDFEVQAMPTFVLVKKGKERERIVGVKKDELQRMIEKHRF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G594350
TK1151 IDTkA03G594350
OH-1004 IDLXL04_013337
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)55.000
Protein coverage (%)TK1151 71.613 / OH-1004 79.286
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G594350
LocationChr03:150940500-150941452 (+)
DescriptionSimilar to TRX2: Thioredoxin H2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g39950 Thiol-disulfide oxidoreductase probably involved in the redox regulation of a number of cytosolic enzymes. No verified direct reference in this release
At3g51030 Thiol-disulfide oxidoreductase involved in the redox regulation of a number of cytosolic enzymes. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0800700 Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013337 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0015035 protein-disulfide reductase activity Molecular Function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor Molecular Function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen Molecular Function
KEGG gene cross-reference
ath:AT1G59730
ath:AT5G39950
dosa:Os03g0800700
dosa:Os07g0190800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.417
Rank 1 · TkA03G594350 · TK1151
Endoplasmic reticulum0.247
Rank 2 · TkA03G594350 · TK1151
Nucleus0.231
Rank 3 · TkA03G594350 · TK1151
Golgi apparatus0.142
Rank 4 · TkA03G594350 · TK1151
Mitochondrion0.122
Rank 5 · TkA03G594350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20207PedC-like32-60 aa
PF13905Thioredoxin_844-69 aa
PF08806Sep15_SelM45-61 aa
PF04756OST3_OST647-136 aa
PF00085Thioredoxin52-151 aa
PF08534Redoxin56-85 aa
PF13899Thioredoxin_758-113 aa
PF03190Thioredox_DsbH59-118 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G594350PF20207PedC-like32600.08113.6
TkA03G594350PF13905Thioredoxin_844692.8e-0628.3
TkA03G594350PF08806Sep15_SelM45610.2312.2
TkA03G594350PF04756OST3_OST6471360.00119.3
TkA03G594350PF00085Thioredoxin521513.4e-2898.4
TkA03G594350PF08534Redoxin56850.0116.3
TkA03G594350PF13899Thioredoxin_7581130.001719.1
TkA03G594350PF03190Thioredox_DsbH591180.1612.7
TkA03G594350PF13098Thioredoxin_2601529.2e-0729.9
TkA03G594350PF00578AhpC-TSA601450.0004520.9
TkA03G594350PF14595Thioredoxin_9631340.001918.8
TkA03G594350PF13728TraF681400.02315.2
TkA03G594350PF13905Thioredoxin_8691102.8e-0628.3
TkA03G594350PF20207PedC-like811470.08113.6
TkA03G594350PF08806Sep15_SelM1021530.2312.2
TkA03G594350PF07689KaiB1061410.1812.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q38879Arabidopsis thalianasp|Q38879|TRXH2_ARATH Thioredoxin H259.500%Swiss-ProtHigh
P29448Arabidopsis thalianasp|P29448|TRXH1_ARATH Thioredoxin H150.000%Swiss-ProtHigh
Q851R5Oryza sativa subsp. japonicasp|Q851R5|TRH22_ORYSJ Thioredoxin H2-257.700%Swiss-ProtMedium

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