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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G578880
Reference: TK1151 Chr: Chr03 Coordinates: 146854048-146855133 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1056 bp · TkA03G578880|TK1151|cDNA

ATGAGACTACCATTTTCAACAACTTCCCATCATCATCGCTTCAAATTATTTTCTTCATTTCTCACCTTCTTTCAACCCACCCCCACCTCTTCTTCTTCTTCTTCTTCCACCACAATCGCCGCCGCTGCATCCCTCCCCACCCGTCGCAGAAAACGAAAGATTGTCGTCATCATGGGTGCAACCGGCGCCGGGAAATCCCGGCTCTCAATCGATCTCGCTACTAGATTTTTTAAAAACTCAGAGATCATCAACTCCGATAA...

CDS

Download CDS FASTA

1056 bp · TkA03G578880|TK1151|CDS

ATGAGACTACCATTTTCAACAACTTCCCATCATCATCGCTTCAAATTATTTTCTTCATTTCTCACCTTCTTTCAACCCACCCCCACCTCTTCTTCTTCTTCTTCTTCCACCACAATCGCCGCCGCTGCATCCCTCCCCACCCGTCGCAGAAAACGAAAGATTGTCGTCATCATGGGTGCAACCGGCGCCGGGAAATCCCGGCTCTCAATCGATCTCGCTACTAGATTTTTTAAAAACTCAGAGATCATCAACTCCGATAA...

Protein

Download Protein FASTA

351 aa · TkA03G578880|TK1151|PROTEIN

MRLPFSTTSHHHRFKLFSSFLTFFQPTPTSSSSSSSTTIAAAASLPTRRRKRKIVVIMGATGAGKSRLSIDLATRFFKNSEIINSDKMQVYAGLDITTNKITMQEQLGVPHHLLGAIDPTKSVFTPMEFRNVASEIISEIKSRRGLPLVVGGSNSLIYSLVTKRYDPKSDVFNGPDPHPVSSEFRYECCFIWVDVSLPVLNQYLSKRVDEMLDSGMFEELAEFFRSEDHKRVNRCGLGQAIGVPEFETYFKKFPGFRRME...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G578880
TK1151 IDTkA03G578880
OH-1004 IDLXL04_011269
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 84.046 / OH-1004 92.767
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G578880
LocationChr03:146854048-146855133 (+)
DescriptionSimilar to Adenylate isopentenyltransferase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68460 Involved in cytokinin biosynthesis.
Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis.2006 · DOI: 10.1073/pnas.0603522103
At3g19160 Involved in cytokinin biosynthesis.
Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana.2001 · DOI: 10.1074/jbc.m102130200
The Arabidopsis AtIPT8/PGA22 gene encodes an isopentenyl transferase that is involved in de novo cytokinin biosynthesis.2003 · DOI: 10.1104/pp.011494
At4g24650 Involved in cytokinin biosynthesis. No verified direct reference in this release
At1g25410 Involved in cytokinin biosynthesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011269 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006400 tRNA modification Biological Process
GO:0009691 cytokinin biosynthetic process Biological Process
GO:0034265 isopentenyl adenine biosynthetic process Biological Process
GO:0080117 secondary growth Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0009824 AMP dimethylallyltransferase activity Molecular Function
GO:0052381 tRNA dimethylallyltransferase activity Molecular Function
KEGG gene cross-reference
ag:AAS94327
ath:AT1G25410
ath:AT1G68460
ath:AT3G19160
ath:AT4G24650
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.629
Rank 1 · TkA03G578880 · TK1151
Mitochondrion0.303
Rank 2 · TkA03G578880 · TK1151
Nucleus0.100
Rank 3 · TkA03G578880 · TK1151
Cytoplasm0.070
Rank 4 · TkA03G578880 · TK1151
Peroxisome0.018
Rank 5 · TkA03G578880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26992DUF831830-58 aa
PF06414Zeta_toxin47-89 aa
PF04851ResIII47-81 aa
PF20720nSTAND350-86 aa
PF02562PhoH50-107 aa
PF13481AAA_2550-75 aa
PF13401AAA_2250-76 aa
PF00005ABC_tran51-104 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G578880PF26992DUF831830580.2112.4
TkA03G578880PF06414Zeta_toxin47890.00816.4
TkA03G578880PF04851ResIII47810.01116.3
TkA03G578880PF20720nSTAND350860.00617.0
TkA03G578880PF02562PhoH501070.01715.3
TkA03G578880PF13481AAA_2550750.06613.5
TkA03G578880PF13401AAA_2250760.1113.6
TkA03G578880PF00005ABC_tran511040.08414.2
TkA03G578880PF13173AAA_14521560.05814.1
TkA03G578880PF01745IPT531655.7e-0729.9
TkA03G578880PF00910RNA_helicase55880.2612.5
TkA03G578880PF01715IPPT891631.2e-33117.5
TkA03G578880PF01715IPPT1812941.2e-33117.5
TkA03G578880PF01745IPT2052315.7e-0729.9
TkA03G578880PF13401AAA_222122300.1113.6
TkA03G578880PF03847TFIID_20kDa2723090.1213.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94ID3Arabidopsis thalianasp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic55.600%Swiss-ProtHigh
Q9LJL4Arabidopsis thalianasp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic49.700%Swiss-ProtMedium
Q9SB60Arabidopsis thalianasp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 449.800%Swiss-ProtMedium
Q9C6L1Arabidopsis thalianasp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic48.300%Swiss-ProtMedium

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