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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G560880
Reference: TK1151 Chr: Chr03 Coordinates: 142242506-142245337 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2428 bp · TkA03G560880|TK1151|cDNA

AAAAAAGCTTAAGCCAATAGCTCATCCCCAAAATATAATGAAAGGAAAGTAGCAGGAAGCAAGACTCTCCTTCCTCATCGCCTTAAATCCTTGAGCTCTGTTTCTTCTTTCTCTTTTCAGGGTTTCGTTTCTCTCTATTTCAACCTTCCGCGTCTCTTTGCACATGGAAGATTAGATCCAATCCTGTTTCAACCGTATCTTCAATAGGGGATTGTGTAGCAAACCCTAGATCCAAAATTTCAAATTATCCAAGATCCCCT...

CDS

Download CDS FASTA

1908 bp · TkA03G560880|TK1151|CDS

ATGGTTGGCGCTACTACCCATCAACAACAACAAGCCCCTCAATTGGTTCCTCCGCCATCGTCAACATCATCGGCAGCTCCGACAACTACACCGGAGGAAGACGAGTTCTTGAAAAGGAACACCGATTGCGTTTACTTCCTAGCTTCTCCCTTAACCTGCAAAAAGGGAAGTGAGTGTGAGTATCGCCATAGTGAGGTTGCACGGGTCAACCCGAGGGACTGTTGGTACTGGTTAAACGGAAATTGCTTAAATCCAAAATG...

Protein

Download Protein FASTA

635 aa · TkA03G560880|TK1151|PROTEIN

MVGATTHQQQQAPQLVPPPSSTSSAAPTTTPEEDEFLKRNTDCVYFLASPLTCKKGSECEYRHSEVARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGADVSTPMAPPPPPSVPTPHPAPYGAPKQGVACIFFQKGFCLKGHLCPFSHGPPNSIPNKPAQPATEPPKMSVPDQKFTPPETAQKPAEFKGKQPPLPARNGGNGGGGSVRERVVMPPVMDERPRINPNPNLNPTFNHGYHVSENDRVMNGKEYADEYSREP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G560880
TK1151 IDTkA03G560880
OH-1004 IDLXL04_022444
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)48.600
Protein coverage (%)TK1151 88.976 / OH-1004 90.781
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G560880
LocationChr03:142242506-142245337 (-)
DescriptionSimilar to At2g02160: Zinc finger CCCH domain-containing protein 17
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g02160 Zinc finger CCCH domain-containing protein 17. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0671800 Zinc finger CCCH domain-containing protein 32. No verified direct reference in this release
Os02g0831100 Zinc finger CCCH domain-containing protein 19. No verified direct reference in this release
Os05g0176400 Zinc finger CCCH domain-containing protein 34. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022444 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G02160
dosa:Os02g0831100
dosa:Os04g0671800
dosa:Os05g0176400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.979
Rank 1 · TkA03G560880 · TK1151
Cytoplasm0.074
Rank 2 · TkA03G560880 · TK1151
Cell membrane0.023
Rank 3 · TkA03G560880 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA03G560880 · TK1151
Plastid0.010
Rank 5 · TkA03G560880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15663zf-CCCH_338-92 aa
PF16131Torus40-64 aa
PF14608zf-CCCH_242-63 aa
PF18345zf_CCCH_443-47 aa
PF25427zf-CCCH_UNK43-64 aa
PF18345zf_CCCH_452-63 aa
PF00642zf-CCCH52-65 aa
PF25542zf-CCCH_1253-65 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G560880PF15663zf-CCCH_338921.9e-1454.5
TkA03G560880PF16131Torus40640.003218.7
TkA03G560880PF14608zf-CCCH_242634.3e-1040.4
TkA03G560880PF18345zf_CCCH_443470.0001722.3
TkA03G560880PF25427zf-CCCH_UNK43643.08.6
TkA03G560880PF18345zf_CCCH_452630.0001722.3
TkA03G560880PF00642zf-CCCH52650.2412.1
TkA03G560880PF25542zf-CCCH_1253653.3e-0730.6
TkA03G560880PF25584zf-CCCH_RBM2253620.1313.0
TkA03G560880PF22623zf-CCCH_953633.28.3
TkA03G560880PF25584zf-CCCH_RBM2269830.1313.0
TkA03G560880PF00642zf-CCCH72930.2412.1
TkA03G560880PF14608zf-CCCH_273924.3e-1040.4
TkA03G560880PF18345zf_CCCH_474840.0001722.3
TkA03G560880PF16131Torus74910.003218.7
TkA03G560880PF25542zf-CCCH_1275933.3e-0730.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUM0Arabidopsis thalianasp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 1736.000%Swiss-ProtMedium
Q0J952Oryza sativa subsp. japonicasp|Q0J952|C3H32_ORYSJ Zinc finger CCCH domain-containing protein 3233.900%Swiss-ProtMedium
Q6K977Oryza sativa subsp. japonicasp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 1932.900%Swiss-ProtMedium
Q6AT25Oryza sativa subsp. japonicasp|Q6AT25|C3H34_ORYSJ Zinc finger CCCH domain-containing protein 3448.200%Swiss-ProtLow

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