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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G499780
Reference: TK1151 Chr: Chr03 Coordinates: 125474219-125481718 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1446 bp · TkA03G499780|TK1151|cDNA

GTAATTCTCTTTTTATCTTTCACATATCCTATAAATAAACCTGCTTTTTTTGCCATAACCTTTGTATCCTGTAAACTATATTCAGCATCAGAGCAAGAACACAGTCCATTGACAGAATTTGGAGGATCTCAAGAGGACGATTCAGATTGCCGTTTCTTTGAGTTGGATGAAATTGCCACTGCGACTAATAACTTCTGTACCTCTAATGAGATTGGCATAGGAGGGTTTGGTAGGGTCTATAAGGGTGAATTAACAAGGGG...

CDS

Download CDS FASTA

2265 bp · TkA03G499780|TK1151|CDS

CGAAGAAGGCCAATCCGAAGAACATCTTTAGGTGTACATTTGATCCTAGACGATTCTGGGGTTTTTCTTATTCAAGATGGTAGTAAGCGAGTCATCTGGAGGAACCCACCAAAACGTTACTCTCCATCAGTCGGCCGTAAACCAGTTTTACAGCTTTTACCATCTGGAAATCTTGTGGTTAGAGATTGTGATAATGTGTCTTGTGGAGGATATATCTGGGAAAGCTTTAATCATCCAGGCGATACCTTATTACCAGGGAT...

Protein

Download Protein FASTA

754 aa · TkA03G499780|TK1151|PROTEIN

RRRPIRRTSLGVHLILDDSGVFLIQDGSKRVIWRNPPKRYSPSVGRKPVLQLLPSGNLVVRDCDNVSCGGYIWESFNHPGDTLLPGMQLSLDHGSNLRYRAITSWRKKDDPSDGDFKFGFDRSVQAPQLVLTKENGVRLSRWGPWDGQKFSGMNSLMDNPILSPTLRFDDGQVSLKFEALNQSILLRLVLSPLGSLQFLWWKSTNEGWLTILTLNKDNCDRIGSCGPYGICYSDDPSCRCLEEGFMAISSVDWCGFECSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G499780
TK1151 IDTkA03G499780
OH-1004 IDLXL04_016429
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)43.500
Protein coverage (%)TK1151 100.000 / OH-1004 88.411
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G499780
LocationChr03:125474219-125481718 (-)
DescriptionSimilar to At4g27290: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27290 G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290. No verified direct reference in this release
At4g21380 Involved in the regulation of cellular expansion and differentiation. No verified direct reference in this release
At1g65800 Involved in the regulation of cellular expansion and differentiation. No verified direct reference in this release
At1g65790 Involved in the regulation of cellular expansion and differentiation. No verified direct reference in this release
At4g27300 G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016429 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006955 immune response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0048544 recognition of pollen Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G65790
ath:AT1G65800
ath:AT4G21380
ath:AT4G27290
ath:AT4G27300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.866
Rank 1 · TkA03G499780 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA03G499780 · TK1151
Cytoplasm0.077
Rank 3 · TkA03G499780 · TK1151
Nucleus0.048
Rank 4 · TkA03G499780 · TK1151
Lysosome / Vacuole0.024
Rank 5 · TkA03G499780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin1-106 aa
PF00954S_locus_glycop141-246 aa
PF08276PAN_2270-334 aa
PF00024PAN_1279-313 aa
PF00954S_locus_glycop298-310 aa
PF00024PAN_1417-425 aa
PF00069Pkinase438-704 aa
PF07714PK_Tyr_Ser-Thr438-705 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G499780PF01453B_lectin11062.5e-1660.7
TkA03G499780PF00954S_locus_glycop1412461.3e-1971.5
TkA03G499780PF08276PAN_22703344.7e-1659.4
TkA03G499780PF00024PAN_12793136.07.5
TkA03G499780PF00954S_locus_glycop2983101.3e-1971.5
TkA03G499780PF00024PAN_14174256.07.5
TkA03G499780PF00069Pkinase4387041.6e-48166.1
TkA03G499780PF07714PK_Tyr_Ser-Thr4387052.9e-48165.2
TkA03G499780PF03109ABC14414654.3e-0523.5
TkA03G499780PF03109ABC15025914.3e-0523.5
TkA03G499780PF17667Pkinase_fungal5396220.004116.6
TkA03G499780PF01636APH5495830.1212.8
TkA03G499780PF12330Haspin_kinase5515910.01515.0
TkA03G499780PF11883DUF34037167543.8e-0730.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81832Arabidopsis thalianasp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g2729042.300%Swiss-ProtMedium
O81905Arabidopsis thalianasp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-842.000%Swiss-ProtMedium
Q9S972Arabidopsis thalianasp|Q9S972|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-642.200%Swiss-ProtMedium
Q39086Arabidopsis thalianasp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-740.900%Swiss-ProtMedium
O81833Arabidopsis thalianasp|O81833|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-140.400%Swiss-ProtMedium

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