TkA03G499770 | RubberDandelionOmics

Gene overview

TkA03G499770

Reference: TK1151 Chr: Chr03 Coordinates: 125453764-125460018 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2706 bp · TkA03G499770|TK1151|cDNA

GTGAAAAGGACAGAAACAGCTCCCGTTAATCAGCTATTCTTTGTGAACTTTGTTTCATCAGTATAATATCACTTGTCAATATTACGTTTCTTTACAACCATCGAACAGACAAAAAACAACTGATCAGAAAAAACAAAACATGTATCAAGAAAAAATCATTCTATTATCATTGTTGCTGAACCTTTTCTTCAGCTTTTGCACTTCTACCGACTCCATCACACTCACTCGACCCCTTAAAGACGGTGACGTTTTGGTCTCCA...

CDS

Download CDS FASTA

2517 bp · TkA03G499770|TK1151|CDS

ATGTATCAAGAAAAAATCATTCTATTATCATTGTTGCTGAACCTTTTCTTCAGCTTTTGCACTTCTACCGACTCCATCACACTCACTCGACCCCTTAAAGACGGTGACGTTTTGGTCTCCAGTGGAGAAACTTTCGCGCTTGGATTCTTTAGCCCAAGAAATTCCAGCAACCGGTATGTGGGTATCTGGTATAACAAGGTGTCGGAGCAAACCGTCGTTTGGGTTGCCAATAGAGACCGTCCGATCACTAACTCAACCGG...

Protein

Download Protein FASTA

838 aa · TkA03G499770|TK1151|PROTEIN

MYQEKIILLSLLLNLFFSFCTSTDSITLTRPLKDGDVLVSSGETFALGFFSPRNSSNRYVGIWYNKVSEQTVVWVANRDRPITNSTGILSLDETGNLVLRQSGQPFLFWSTNVSGLVNNDVNSGKLLDSGNLVLFQGQDRGVYSWQSFDYPSNTILPGLKFGEDLNSGLNRMATSWKSGGNPGVGEYSFKLELTGSPQIFLYKGATPIWRGGSWTGHGWSGVPEMTPNYLFDLTYTNNNDEVALVYVIRNSSIFSRLVLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G499770`
TK1151 ID	TkA03G499770
OH-1004 ID	LXL04_010119
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 97.852 / OH-1004 43.663 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G499770

Location Chr03:125453764-125460018 (-)

Description Similar to RKS1: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11340`	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1.	No verified direct reference in this release
`At1g11410`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410.	No verified direct reference in this release
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65790`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At1g65800`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010119 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G11340

ath:AT1G11410

ath:AT4G21380

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.871

Rank 1 · TkA03G499770 · TK1151

Endoplasmic reticulum0.081

Rank 2 · TkA03G499770 · TK1151

Cytoplasm0.069

Rank 3 · TkA03G499770 · TK1151

Nucleus0.039

Rank 4 · TkA03G499770 · TK1151

Lysosome / Vacuole0.024

Rank 5 · TkA03G499770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin71-177 aa

PF00954S_locus_glycop209-319 aa

PF07645EGF_CA286-320 aa

PF09132BmKX331-347 aa

PF08276PAN_2342-407 aa

PF14610Psg1428-469 aa

PF07714PK_Tyr_Ser-Thr521-785 aa

PF00069Pkinase521-718 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G499770	`PF01453`	B_lectin	71	177	6.7e-31	107.6
TkA03G499770	`PF00954`	S_locus_glycop	209	319	4.7e-31	108.3
TkA03G499770	`PF07645`	EGF_CA	286	320	0.028	15.4
TkA03G499770	`PF09132`	BmKX	331	347	0.29	12.0
TkA03G499770	`PF08276`	PAN_2	342	407	3.6e-18	66.2
TkA03G499770	`PF14610`	Psg1	428	469	0.0053	17.3
TkA03G499770	`PF07714`	PK_Tyr_Ser-Thr	521	785	2.7e-44	152.1
TkA03G499770	`PF00069`	Pkinase	521	718	2.7e-42	145.7
TkA03G499770	`PF03109`	ABC1	527	569	0.00034	20.6
TkA03G499770	`PF03109`	ABC1	619	678	0.00034	20.6
TkA03G499770	`PF17667`	Pkinase_fungal	621	706	0.22	10.9
TkA03G499770	`PF11883`	DUF3403	792	838	0.0081	17.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZT07`	Arabidopsis thaliana	sp\|Q9ZT07\|RKS1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	49.900%	Swiss-Prot	Medium
`Q9LPZ3`	Arabidopsis thaliana	sp\|Q9LPZ3\|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410	49.900%	Swiss-Prot	Medium
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	45.400%	Swiss-Prot	Medium
`Q39086`	Arabidopsis thaliana	sp\|Q39086\|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7	43.900%	Swiss-Prot	Medium
`Q9S972`	Arabidopsis thaliana	sp\|Q9S972\|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6	44.000%	Swiss-Prot	Medium

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