TkA03G495300 | RubberDandelionOmics

Gene overview

TkA03G495300

Reference: TK1151 Chr: Chr03 Coordinates: 124338997-124342143 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1515 bp · TkA03G495300|TK1151|cDNA

AAAAAAATTGTGTAGTCTCTGAATACTTTAATGAATAAATCGGCTTCTGCCCCCTTATCGGAAGCCACTTTGCCGTTGATAACAATTTAAAACATACGACTCCAAAATTAGAGATAAAACTCATAAAAGGATTAGAAAACTTACCCAACAACCAGACATCAATAAGAAAACCCCTTCAAATGCGCACAGACATTCCGATGCTCCTAATTTCCTTCATCTCCATTGTTCAGAGAGGTGTAGCTTAGCTCTCAGCAAAGAGG...

CDS

Download CDS FASTA

441 bp · TkA03G495300|TK1151|CDS

ATGGTATGTCAACAGTGGGGAGGAATTAATGGAATCGGATTCTATGCAAGCCAAATCTTTGAAACCGCTGGATTTTCATTGGGGATATCTGGAACGATTGCTTATGCCTTGATAAAGATTCATGTCACGATTGTTGGCATGATCTTGCTGGACATATCAGGAAGAAGGATTCTACTTCTGGTTGTGAACTGTAAGGATGAGCTGGCACAATATTATCTGATGGACTGCCTAATTCAGCCTACGGTTGACATAAAGACAGT...

Protein

Download Protein FASTA

146 aa · TkA03G495300|TK1151|PROTEIN

MVCQQWGGINGIGFYASQIFETAGFSLGISGTIAYALIKIHVTIVGMILLDISGRRILLLVVNCKDELAQYYLMDCLIQPTVDIKTVLSLLMERLSSYAASSPEVLPEFLQVEAFSKLSSAIGKVQVLFELIKGLIKDEFCIFQID

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G495300`
TK1151 ID	TkA03G495300
OH-1004 ID	LXL04_010075
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 56.809 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G495300

Location Chr03:124338997-124342143 (-)

Description Similar to RABA5D: Ras-related protein RABA5d

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51310`	Plays a role in vesicular protein sorting.	No verified direct reference in this release
`At1g75850`	Plays a role in vesicular protein sorting.	Arabidopsis VPS35, a retromer component, is required for vacuolar protein sorting and involved in plant growth and leaf senescence.2008 · DOI: 10.1093/pcp/pcn006
`At2g17790`	Plays a role in vesicular protein sorting.	Loss-of-function mutations of retromer large subunit genes suppress the phenotype of an Arabidopsis zig mutant that lacks Qb-SNARE VTI11.2010 · DOI: 10.1105/tpc.109.069294
`At5g18840`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010075 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0042147 retrograde transport, endosome to Golgi Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005770 late endosome Cellular Component

GO:0005771 multivesicular body Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G05810

ath:AT1G75850

ath:AT2G31680

ath:AT3G51310

ath:AT5G18840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.434

Rank 1 · TkA03G495300 · TK1151

Cytoplasm0.160

Rank 2 · TkA03G495300 · TK1151

Cell membrane0.146

Rank 3 · TkA03G495300 · TK1151

Lysosome / Vacuole0.130

Rank 4 · TkA03G495300 · TK1151

Golgi apparatus0.117

Rank 5 · TkA03G495300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr2-61 aa

PF03635Vps3556-79 aa

PF03635Vps3578-125 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G495300	`PF00083`	Sugar_tr	2	61	2.7e-09	37.2
TkA03G495300	`PF03635`	Vps35	56	79	2.2e-10	40.5
TkA03G495300	`PF03635`	Vps35	78	125	2.2e-10	40.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A8R7K9`	Arabidopsis thaliana	sp\|A8R7K9\|VP35C_ARATH Vacuolar protein sorting-associated protein 35C	63.000%	Swiss-Prot	Low
`F4I0P8`	Arabidopsis thaliana	sp\|F4I0P8\|VP35B_ARATH Vacuolar protein sorting-associated protein 35B	58.700%	Swiss-Prot	Low
`Q7X659`	Arabidopsis thaliana	sp\|Q7X659\|VP35A_ARATH Vacuolar protein sorting-associated protein 35A	55.400%	Swiss-Prot	Low
`Q8LBI9`	Arabidopsis thaliana	sp\|Q8LBI9\|EDL16_ARATH Sugar transporter ERD6-like 16	55.700%	Swiss-Prot	Low
`Q3ECP7`	Arabidopsis thaliana	sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5	57.400%	Swiss-Prot	Low

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