TkA03G485510 | RubberDandelionOmics

Gene overview

TkA03G485510

Reference: TK1151 Chr: Chr03 Coordinates: 121478907-121481412 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2270 bp · TkA03G485510|TK1151|cDNA

TGAAAGCAAAATAATAGAAGAGTGAGATTTCTTAATTTAGTAAAAAACGCCTTGTATCTTTCTCTTAATTTCTCTCTCCCTCACCCACCCTAAGATATTCCCAATTCCCAAAAACAACATTTGAGCTTGTTCATGTTATCTCCCTCCCACAAAACCAGGCTGACCTCCTGTCATCATCATTCTGCTTTTCGCTTTTTGCAGTCGGATATCTCCCGTTTCGATCTTCCTGAGGGAGAATCCCCCAATATTCTTTTTCCGCC...

CDS

Download CDS FASTA

1740 bp · TkA03G485510|TK1151|CDS

ATGTTTAGTTTTCAAGTAAGAGCTCGTCCAAATGTCGCAACTTCTCCTTCACGACCACCAGGAACTACTCCAACAGGTTCTCCTAGTGCACCAGTTGGAGAGATCGATACAAGGGCACCTTTCCAATCTGTTAAGGCTGCTCGTAATTTATTTGGAGAATCATCACCAAGATCAGGAAAAGTACCGCCCGCCTTCAGAACCAAAAACGATGAGCAAGTGTTGGAGAAGGAGACAGAGTTACATTGGACGCTAAAGGAGCT...

Protein

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579 aa · TkA03G485510|TK1151|PROTEIN

MFSFQVRARPNVATSPSRPPGTTPTGSPSAPVGEIDTRAPFQSVKAARNLFGESSPRSGKVPPAFRTKNDEQVLEKETELHWTLKELDNYKELLRSSEIIKNQARRDLEKANATLHELTNRLEMISEGKHAAIEVTEAAKYKAQQLEMLKSSTTELSNDNWEEDVANEQKQYRTSANELIAIKQELTNLKQDFDAALEAKLTAFQQAADAQHAAKVNHEKMGDLTKEVDQMRETLNRVKLASQKAHEEHLNLIEDKDYRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G485510`
TK1151 ID	TkA03G485510
OH-1004 ID	LXL04_009956
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G485510

Location Chr03:121478907-121481412 (-)

Description Similar to At1g12150: WEB family protein At1g12150

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12150`	WEB family protein At1g12150.	No verified direct reference in this release
`At5g55860`	WEB family protein At5g55860.	No verified direct reference in this release
`At4g17210`	Putative WEB family protein At4g17210.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009956 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009903 chloroplast avoidance movement Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0071260 cellular response to mechanical stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G12150

ath:AT2G26570

ath:AT4G17210

ath:AT4G33390

ath:AT5G55860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.621

Rank 1 · TkA03G485510 · TK1151

Nucleus0.266

Rank 2 · TkA03G485510 · TK1151

Cell membrane0.231

Rank 3 · TkA03G485510 · TK1151

Endoplasmic reticulum0.054

Rank 4 · TkA03G485510 · TK1151

Plastid0.047

Rank 5 · TkA03G485510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05701WEMBL34-573 aa

PF30381CEP135_N75-254 aa

PF30381CEP135_N251-426 aa

PF30381CEP135_N428-566 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G485510	`PF05701`	WEMBL	34	573	6.9e-37	128.1
TkA03G485510	`PF30381`	CEP135_N	75	254	0.0077	15.9
TkA03G485510	`PF30381`	CEP135_N	251	426	0.0077	15.9
TkA03G485510	`PF30381`	CEP135_N	428	566	0.0077	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FWW5`	Arabidopsis thaliana	sp\|Q9FWW5\|Y1215_ARATH WEB family protein At1g12150	40.300%	Swiss-Prot	Low
`Q9LVQ4`	Arabidopsis thaliana	sp\|Q9LVQ4\|Y5586_ARATH WEB family protein At5g55860	31.400%	Swiss-Prot	Low
`O23564`	Arabidopsis thaliana	sp\|O23564\|Y4721_ARATH Putative WEB family protein At4g17210	31.500%	Swiss-Prot	Low

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