LXL04_009956 | RubberDandelionOmics

Gene overview

LXL04_009956

Reference: OH-1004 Chr: Chr02 Coordinates: 136728776-136730586 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · LXL04_009956|LXL04_009956|OH1004|cDNA

ATGTTTAGTTTTCAAGTAAGAGCTCGTCCAAATGTCGCAACTTCTCCTTCACGACCACCAGGAACTACTCCAACAGGTTCTCCTAGTGCACCAGTTGGAGAGATCGATACAAGGGCACCTTTCCAATCTGTTAAGGCTGCCCGTAATTTATTTGGAGAATCATCACCAAGATCAGGAAGAGTACCGCCCGCCTTCAGAACCAAAAACGAtgagCAAGTGTTGGAGAAGGAGACAGAGTTACATTGGACGCTAAAGGAGCT...

CDS

Download CDS FASTA

1740 bp · LXL04_009956|LXL04_009956|OH1004|CDS

ATGTTTAGTTTTCAAGTAAGAGCTCGTCCAAATGTCGCAACTTCTCCTTCACGACCACCAGGAACTACTCCAACAGGTTCTCCTAGTGCACCAGTTGGAGAGATCGATACAAGGGCACCTTTCCAATCTGTTAAGGCTGCCCGTAATTTATTTGGAGAATCATCACCAAGATCAGGAAGAGTACCGCCCGCCTTCAGAACCAAAAACGATGAGCAAGTGTTGGAGAAGGAGACAGAGTTACATTGGACGCTAAAGGAGCT...

Protein

Download Protein FASTA

579 aa · LXL04_009956|LXL04_009956|OH1004|PROTEIN

MFSFQVRARPNVATSPSRPPGTTPTGSPSAPVGEIDTRAPFQSVKAARNLFGESSPRSGRVPPAFRTKNDEQVLEKETELHWTLKELDNYKELLRSSEIIKNQARRDLEKANATLHELTNRLEMISEGKHAAIEVTEAAKYKAQQLEMLKSSTTELSNDNWEEDVANEQKQYRTSANELIAIKQELTNLKQDFDAALEAKLTAFQQAADAQHAAKVNHEKMGDLTKEVDQMRETLNRVKLASQKAHEEHLNLIEDKDYRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009956`
TK1151 ID	TkA03G485510
OH-1004 ID	LXL04_009956
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009956

Location Chr02:136728776-136730586 (-)

Description Similar to At1g12150: WEB family protein At1g12150

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12150`	WEB family protein At1g12150.	No verified direct reference in this release
`At5g55860`	WEB family protein At5g55860.	No verified direct reference in this release
`At4g17210`	Putative WEB family protein At4g17210.	No verified direct reference in this release
`At2g26570`	Required for the chloroplast avoidance response under high intensity blue light.	Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis.2010 · DOI: 10.1073/pnas.1007836107
`At4g33390`	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009956 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009903 chloroplast avoidance movement Biological Process

GO:0009904 chloroplast accumulation movement Biological Process

GO:0071260 cellular response to mechanical stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G12150

ath:AT2G26570

ath:AT4G17210

ath:AT4G33390

ath:AT5G55860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.622

Rank 1 · LXL04_009956 · OH-1004

Nucleus0.267

Rank 2 · LXL04_009956 · OH-1004

Cell membrane0.230

Rank 3 · LXL04_009956 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_009956 · OH-1004

Plastid0.047

Rank 5 · LXL04_009956 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05701.17WEMBL34-573 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009956	`PF05701.17`	WEMBL	34	573	2.8e-37	129.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FWW5`	Arabidopsis thaliana	WEB family protein At1g12150	36.151%	Swiss-Prot	moderate database homology
`Q9LVQ4`	Arabidopsis thaliana	WEB family protein At5g55860	34.683%	Swiss-Prot	moderate database homology
`O23564`	Arabidopsis thaliana	Putative WEB family protein At4g17210	30.435%	Swiss-Prot	moderate database homology
`O48724`	Arabidopsis thaliana	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1	27.183%	Swiss-Prot	weak database homology
`Q9SZB6`	Arabidopsis thaliana	Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1	27.417%	Swiss-Prot	weak database homology

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