TkA03G479000 | RubberDandelionOmics

Gene overview

TkA03G479000

Reference: TK1151 Chr: Chr03 Coordinates: 119758547-119762102 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1923 bp · TkA03G479000|TK1151|cDNA

ATCCATTGATCAAAAACTTCAAAGTCTTGTTTTATTTTGCCCTAACCCCTTTTCTTCATCAATTCATTCGTCCCCCACTGTCTCTCATTAATTCATTCGCACAATTCCGTTTCCTTTCATCAAATGCATCCGCCTGCTATTTAGGGTTACCATTGTTCATAGAAGGAATCGAGCGGCGATCGTGGGTTTCCACGCTGTGAGATTCGTTGGTGATCTAGGGGAAACAGATGCAACTCAAAGCCTGCTTTGCTTTCCAGCGA...

CDS

Download CDS FASTA

897 bp · TkA03G479000|TK1151|CDS

ATGATGTTCATGAATCAACCGAGGATCATGGTCATGAGTCATGGCGGACTGATTTCTCAACGTGGAGCTTCGGAAGACGTCTTTTTGTCGTCATTGGATTTTGTATTCCTTTGTTCTTTGCCACAAATTCAGGCTAGAAATCAGAAGGTAGGGGAACCGCCACTTCTTTCATTTTCCACTTTCTTACAAGCCGCCCGCAACAACATGATTCTTGTTGTTCCAGCACTTCTTTATGCTATCAATAACTACTTAAAGTTCAT...

Protein

Download Protein FASTA

298 aa · TkA03G479000|TK1151|PROTEIN

MMFMNQPRIMVMSHGGLISQRGASEDVFLSSLDFVFLCSLPQIQARNQKVGEPPLLSFSTFLQAARNNMILVVPALLYAINNYLKFIMQLYFNPTTVKMLSNLKVLVIAILLRIIMKRRFSVIQWEALALLLIGISITQMQALPKDSSGIGVPVAMGAYIYTFVFVTVPSLASVCNEYALKSQYDTSIYLQNLFSYGYGAIFNFLGILGTVVLKGPESFDILRGHSKATMLLIINNAGQGILYSFFLQICRYNFEKVFVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G479000`
TK1151 ID	TkA03G479000
OH-1004 ID	LXL04_009859
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 76.174 / OH-1004 99.127 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G479000

Location Chr03:119758547-119762102 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59360`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`At2g43240`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0604300`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`UniProt: Q7X7C4`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release
`UniProt: Q01IU9`	Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009859 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015739 sialic acid transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015136 sialic acid transmembrane transporter activity Molecular Function

GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G43240

ath:AT3G59360

dosa:Os02g0604300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.510

Rank 1 · TkA03G479000 · TK1151

Endoplasmic reticulum0.384

Rank 2 · TkA03G479000 · TK1151

Cytoplasm0.091

Rank 3 · TkA03G479000 · TK1151

Nucleus0.059

Rank 4 · TkA03G479000 · TK1151

Cell membrane0.051

Rank 5 · TkA03G479000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16913PUNUT40-168 aa

PF04142Nuc_sug_transp59-248 aa

PF00892EamA70-137 aa

PF00892EamA198-198 aa

PF16913PUNUT205-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G479000	`PF16913`	PUNUT	40	168	0.00019	21.5
TkA03G479000	`PF04142`	Nuc_sug_transp	59	248	1.4e-17	64.6
TkA03G479000	`PF00892`	EamA	70	137	0.00055	20.9
TkA03G479000	`PF00892`	EamA	198	198	0.00055	20.9
TkA03G479000	`PF16913`	PUNUT	205	258	0.00019	21.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H6`	Arabidopsis thaliana	sp\|Q9C5H6\|CSTR3_ARATH CMP-sialic acid transporter 3	75.700%	Swiss-Prot	High
`Q8GY97`	Arabidopsis thaliana	sp\|Q8GY97\|CSTR2_ARATH CMP-sialic acid transporter 2	77.100%	Swiss-Prot	High
`Q6K8S7`	Oryza sativa subsp. japonica	sp\|Q6K8S7\|CSTR5_ORYSJ CMP-sialic acid transporter 5	76.600%	Swiss-Prot	High
`Q7X7C4`	Oryza sativa subsp. japonica	sp\|Q7X7C4\|CSTR4_ORYSJ CMP-sialic acid transporter 4	74.800%	Swiss-Prot	High
`Q01IU9`	Oryza sativa subsp. indica	sp\|Q01IU9\|CSTR4_ORYSI CMP-sialic acid transporter 4	74.300%	Swiss-Prot	High

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