TkA03G474130 | RubberDandelionOmics

Gene overview

TkA03G474130

Reference: TK1151 Chr: Chr03 Coordinates: 118562126-118562878 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · TkA03G474130|TK1151|cDNA

ATGGTGACTAGTACTAGGGGTTCTCTTAAAGAAAAGGAAACCAGTGAAGAAGAGAAAGAAAGAAACGGCAGAAGAAGAATTGGGGAATTTCTGTCAATGAATGATGATTTCATACGTCCAACCCAAGATTCCAAAACTCTCCGGGAATGGGCCGAACACAGGCTGATGATGATCGAGATGAAGAAAAGAACAGAACACATTGTCACGGAATCTCCAAAATCTCCAAACACAGTACTTTCTTCATTAGGTCCAAGCAGTTC...

CDS

Download CDS FASTA

753 bp · TkA03G474130|TK1151|CDS

ATGGTGACTAGTACTAGGGGTTCTCTTAAAGAAAAGGAAACCAGTGAAGAAGAGAAAGAAAGAAACGGCAGAAGAAGAATTGGGGAATTTCTGTCAATGAATGATGATTTCATACGTCCAACCCAAGATTCCAAAACTCTCCGGGAATGGGCCGAACACAGGCTGATGATGATCGAGATGAAGAAAAGAACAGAACACATTGTCACGGAATCTCCAAAATCTCCAAACACAGTACTTTCTTCATTAGGTCCAAGCAGTTC...

Protein

Download Protein FASTA

250 aa · TkA03G474130|TK1151|PROTEIN

MVTSTRGSLKEKETSEEEKERNGRRRIGEFLSMNDDFIRPTQDSKTLREWAEHRLMMIEMKKRTEHIVTESPKSPNTVLSSLGPSSSNTTTSSRPQRFNHSFGCPEHRNVNDHMEVPPEVRAYIENIEGSENVKFVTEKKLTATDVNPSQCRLLMPFKQIPRKDLEFPGPKEEASVLLYVPEKREHYDLVLTEWDMKSTRNYSLKKGWNNVVKENQLRKNMVVQIWSFHVGSTLCLFLIPVDGGCCGGGT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G474130`
TK1151 ID	TkA03G474130
OH-1004 ID	LXL04_009804
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 90.400 / OH-1004 96.170 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G474130

Location Chr03:118562126-118562878 (+)

Description Similar to At3g49610: Putative B3 domain-containing protein At3g49610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49610`	Putative B3 domain-containing protein At3g49610.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009804 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G32030

ath:AT2G31720

ath:AT3G24850

ath:AT3G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.969

Rank 1 · TkA03G474130 · TK1151

Cytoplasm0.092

Rank 2 · TkA03G474130 · TK1151

Cell membrane0.022

Rank 3 · TkA03G474130 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA03G474130 · TK1151

Mitochondrion0.009

Rank 5 · TkA03G474130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF31239At5g26805_C52-66 aa

PF03754At2g31720-like123-236 aa

PF02362B3134-146 aa

PF31239At5g26805_C139-226 aa

PF02362B3160-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G474130	`PF31239`	At5g26805_C	52	66	0.02	16.1
TkA03G474130	`PF03754`	At2g31720-like	123	236	2.6e-22	79.9
TkA03G474130	`PF02362`	B3	134	146	0.0021	18.7
TkA03G474130	`PF31239`	At5g26805_C	139	226	0.02	16.1
TkA03G474130	`PF02362`	B3	160	223	0.0021	18.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCJ8`	Arabidopsis thaliana	sp\|Q9SCJ8\|Y3961_ARATH Putative B3 domain-containing protein At3g49610	31.800%	Swiss-Prot	Low

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