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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G469400
Reference: TK1151 Chr: Chr03 Coordinates: 117298460-117299825 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1212 bp · TkA03G469400|TK1151|cDNA

ATGCTGTCTGCTTCGAATCGCTTGAAATTAGTGGTAGTTCCCCGATGGAAAACCCCCCATTTGATGTGCGTTAATTCCTTCTTATCCAATAGTTGCAGCAATCCGAGTTATGATCGTGGTCAATCTAATTTCTCTCCGAAGGTACTACATATTTATATCACATCAACCCCAGTTAAGCTTCCATGGATACATCCACTATCCTCCATGCTAAAAACCTGCACACTGAAACCCCGATCATTAGTAACACAAGCATCCATCAA...

CDS

Download CDS FASTA

1212 bp · TkA03G469400|TK1151|CDS

ATGCTGTCTGCTTCGAATCGCTTGAAATTAGTGGTAGTTCCCCGATGGAAAACCCCCCATTTGATGTGCGTTAATTCCTTCTTATCCAATAGTTGCAGCAATCCGAGTTATGATCGTGGTCAATCTAATTTCTCTCCGAAGGTACTACATATTTATATCACATCAACCCCAGTTAAGCTTCCATGGATACATCCACTATCCTCCATGCTAAAAACCTGCACACTGAAACCCCGATCATTAGTAACACAAGCATCCATCAA...

Protein

Download Protein FASTA

403 aa · TkA03G469400|TK1151|PROTEIN

MLSASNRLKLVVVPRWKTPHLMCVNSFLSNSCSNPSYDRGQSNFSPKVLHIYITSTPVKLPWIHPLSSMLKTCTLKPRSLVTQASINDEELAHQIFNKITSDSQKTANSITDLCTNHTNKLCKSKNLQAAIKLLQLLLNTSTINPIEILPSYNLLLNAASENNKTEIAANIFKDMYINNLPMDSTTYFHTTKAISKSNDLSFISSFLQEISDINPTRDVTVFNRIIYGFAECGHVHNAILVFDNIKSLKCKPNLITYNTV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G469400
TK1151 IDTkA03G469400
OH-1004 IDLXL04_009758
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 63.524 / OH-1004 63.524
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G469400
LocationChr03:117298460-117299825 (+)
DescriptionSimilar to At1g11900: Pentatricopeptide repeat-containing protein At1g11900
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g11900 Pentatricopeptide repeat-containing protein At1g11900. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G11900
ath:AT5G02860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.713
Rank 1 · TkA03G469400 · TK1151
Plastid0.150
Rank 2 · TkA03G469400 · TK1151
Nucleus0.059
Rank 3 · TkA03G469400 · TK1151
Cytoplasm0.031
Rank 4 · TkA03G469400 · TK1151
Cell membrane0.008
Rank 5 · TkA03G469400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08631SPO2264-141 aa
PF13812PPR_386-99 aa
PF23276TPR_2487-136 aa
PF13877RPAP3_C89-134 aa
PF29070MSC6_N92-132 aa
PF17177PPR_long108-271 aa
PF24760TPR_IF140_C118-175 aa
PF12854PPR_1120-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G469400PF08631SPO22641410.6910.0
TkA03G469400PF13812PPR_386995.8e-2794.3
TkA03G469400PF23276TPR_24871364.2e-1763.0
TkA03G469400PF13877RPAP3_C891340.07314.3
TkA03G469400PF29070MSC6_N921321.6e-1661.1
TkA03G469400PF17177PPR_long1082718.4e-1142.4
TkA03G469400PF24760TPR_IF140_C1181750.01616.3
TkA03G469400PF12854PPR_11201341.7e-2589.1
TkA03G469400PF13041PPR_21211351.4e-40137.8
TkA03G469400PF01535PPR1211362.9e-29100.0
TkA03G469400PF29070MSC6_N1213061.6e-1661.1
TkA03G469400PF00290Trp_syntA1212020.07512.7
TkA03G469400PF13041PPR_21511871.4e-40137.8
TkA03G469400PF01535PPR1511752.9e-29100.0
TkA03G469400PF13812PPR_31511755.8e-2794.3
TkA03G469400PF12854PPR_11511751.7e-2589.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5BIV3Arabidopsis thalianasp|Q5BIV3|PPR35_ARATH Pentatricopeptide repeat-containing protein At1g1190029.000%Swiss-ProtLow

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