TkA03G469160 | RubberDandelionOmics

Gene overview

TkA03G469160

Reference: TK1151 Chr: Chr03 Coordinates: 117242435-117245856 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2048 bp · TkA03G469160|TK1151|cDNA

GAGGTGGCTGGCTGCTTTCTTTCTCGAGTGTCAGTCTATCGTCACTGCCTTCCCTTCAACAAATTGGGCATCTATAAAACAAACCCACTTCATTCGGCCTACCAATATAACGATCTTCTCAATCAATCTTTAAATCACTTGAAAAATGGCGGAGAAAGATTTCGAAAAACAAGTGCAAGAAGGAAGAAAATCCCTCTTCTCACTCCCTACAAAATGGGTAATTTGAGCTTTCTCACAGGAGTTGTATTGGCACCATTAAC...

CDS

Download CDS FASTA

921 bp · TkA03G469160|TK1151|CDS

GAGGTGGCTGGCTGCTTTCTTTCTCGAGTGTCAGTCTATCGTCACTGCCTTCCCTTCAACAAATTGGGCATCTATAAAACAAACCCACTTCATTCGGCCTACCAATATAACGATCTTCTCAATCAATCTTTAAATCACTTGAAAAATGGCGGAGAAAGATTTCGAAAAACAAGTGCAAGAAGGAAGAAAATCCCTCTTCTCACTCCCTACAAAATGGGTAATTTGAGCTTTCTCACAGGAGTTGTATTGGCACCATTAAC...

Protein

Download Protein FASTA

306 aa · TkA03G469160|TK1151|PROTEIN

EVAGCFLSRVSVYRHCLPFNKLGIYKTNPLHSAYQYNDLLNQSLNHLKNGGERFRKTSARRKKIPLLTPYKMGNLSFLTGVVLAPLTRLRSFGNVPQPHAILYYSQRTTKGGLLIAEATVISDTARGYPDTPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNTSFQPNGQAPISSTDKEIYPQIRSNGIDVAQFSPPRRLTTEEIPLVVNDFRVAARNAIEAGFDGVEIHGAHGYLIEQFMKHKVNDRTDQYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G469160`
TK1151 ID	TkA03G469160
OH-1004 ID	LXL04_009755
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.200
Protein coverage (%)	TK1151 73.529 / OH-1004 59.524 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G469160

Location Chr03:117242435-117245856 (+)

Description Similar to OPR11: Putative 12-oxophytodienoate reductase 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76690`	Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds (Probable).	12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis.2000 · DOI: 10.1007/s004250050706 The role of oxophytodienoate reductases in the detoxification of the explosive 2,4,6-trinitrotoluene by Arabidopsis.2009 · DOI: 10.1104/pp.109.141598 An OPR3-independent pathway uses 4,5-didehydrojasmonate for jasmonate synthesis.2018 · DOI: 10.1038/nchembio.2540
`At1g76680`	Specifically cleaves olefinic bonds in alpha,beta-unsaturated carbonyls and may be involved in detoxification or modification of these reactive compounds.	12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis.2000 · DOI: 10.1007/s004250050706 The role of oxophytodienoate reductases in the detoxification of the explosive 2,4,6-trinitrotoluene by Arabidopsis.2009 · DOI: 10.1104/pp.109.141598

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B9FSC8`	Putative oxophytodienoate reductase that may be involved in the biosynthesis or metabolism of oxylipin signaling molecules.	No verified direct reference in this release
`Os06g0216300`	Probably involved in the biosynthesis or metabolism of oxylipin signaling molecules.	Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells.2003 · DOI: 10.1007/s00425-002-0909-z Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice.2008 · DOI: 10.1007/s00425-007-0635-7

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009755 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006629 lipid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006952 defense response Biological Process

GO:0009611 response to wounding Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0031407 oxylipin metabolic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G76680

ath:AT1G76690

dosa:Os06g0216300

sly:544239

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.406

Rank 1 · TkA03G469160 · TK1151

Peroxisome0.206

Rank 2 · TkA03G469160 · TK1151

Plastid0.173

Rank 3 · TkA03G469160 · TK1151

Cytoplasm0.158

Rank 4 · TkA03G469160 · TK1151

Nucleus0.055

Rank 5 · TkA03G469160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00724Oxidored_FMN66-280 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G469160	`PF00724`	Oxidored_FMN	66	280	1.3e-60	206.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYB8`	Arabidopsis thaliana	sp\|Q8GYB8\|OPR2_ARATH 12-oxophytodienoate reductase 2	78.900%	Swiss-Prot	High
`Q8LAH7`	Arabidopsis thaliana	sp\|Q8LAH7\|OPR1_ARATH 12-oxophytodienoate reductase 1	77.500%	Swiss-Prot	High
`B9FSC8`	Oryza sativa subsp. japonica	sp\|B9FSC8\|OPR11_ORYSJ Putative 12-oxophytodienoate reductase 11	82.600%	Swiss-Prot	Medium
`Q84QK0`	Oryza sativa subsp. japonica	sp\|Q84QK0\|OPR1_ORYSJ 12-oxophytodienoate reductase 1	73.800%	Swiss-Prot	Medium

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