TkA03G466080 | RubberDandelionOmics

Gene overview

TkA03G466080

Reference: TK1151 Chr: Chr03 Coordinates: 116323030-116326681 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1982 bp · TkA03G466080|TK1151|cDNA

TTCAGATCAGTGGCTGCTCAGATTTCACTTTCTGGAATTGGAATCCTACCTGATTCAATTCATCTGCCTTCGAGTCTTCCTCCACTCAATTCCCAGGCTGTTGATCTGAGGACTTCGGAGTTCTTGATGCATCCAACTCAAAAGGAATTCACTGAACCATTCGATGCCGTACATGTGGAGATTCGAGATGTTTTGAGAACCATATGCAACACGCTCAGTTTGCCATTGGCTCAAACATGGGGATCATGTACAGGCCGATC...

CDS

Download CDS FASTA

1437 bp · TkA03G466080|TK1151|CDS

TTCAGATCAGTGGCTGCTCAGATTTCACTTTCTGGAATTGGAATCCTACCTGATTCAATTCATCTGCCTTCGAGTCTTCCTCCACTCAATTCCCAGGCTGTTGATCTGAGGACTTCGGAGTTCTTGATGCATCCAACTCAAAAGGAATTCACTGAACCATTCGATGCCGTACATGTGGAGATTCGAGATGTTTTGAGAACCATATGCAACACGCTCAGTTTGCCATTGGCTCAAACATGGGGATCATGTACAGGCCGATC...

Protein

Download Protein FASTA

478 aa · TkA03G466080|TK1151|PROTEIN

FRSVAAQISLSGIGILPDSIHLPSSLPPLNSQAVDLRTSEFLMHPTQKEFTEPFDAVHVEIRDVLRTICNTLSLPLAQTWGSCTGRSEPISVIKSASYVFDPEILGFFEATCSQQLVPGEGIAGKALGTNQPCFTDSNDFCRTDYPTISYHGLNGSVAIRLRSTYMGPTDFILEFFLPRDCKRDEEQKQIQRSIISMIQHVSWSLHLINDEELAKDDESWISNMVKGRERDETVILSMGCEKEEPEEETNTRDESWIADM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G466080`
TK1151 ID	TkA03G466080
OH-1004 ID	LXL04_009712
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.400
Protein coverage (%)	TK1151 92.887 / OH-1004 56.604 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G466080

Location Chr03:116323030-116326681 (-)

Description Similar to NLP1: Protein NLP1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76350`	Probable transcription factor.	No verified direct reference in this release
`At1g20640`	Probable transcription factor.	No verified direct reference in this release
`At2g17150`	Probable transcription factor.	No verified direct reference in this release
`At4g35270`	Probable transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0131100`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009712 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010167 response to nitrate Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0090548 response to nitrate starvation Biological Process

GO:0097009 energy homeostasis Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000987 cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G20640

ath:AT1G76350

ath:AT2G17150

ath:AT4G35270

dosa:Os03g0131100

osa:4331508

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.920

Rank 1 · TkA03G466080 · TK1151

Cytoplasm0.137

Rank 2 · TkA03G466080 · TK1151

Cell membrane0.038

Rank 3 · TkA03G466080 · TK1151

Endoplasmic reticulum0.022

Rank 4 · TkA03G466080 · TK1151

Plastid0.019

Rank 5 · TkA03G466080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22922GAF_NLP55-205 aa

PF02042RWP-RK321-394 aa

PF12728HTH_17340-366 aa

PF15434FAM104415-467 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G466080	`PF22922`	GAF_NLP	55	205	1.5e-43	149.0
TkA03G466080	`PF02042`	RWP-RK	321	394	2.1e-25	89.4
TkA03G466080	`PF12728`	HTH_17	340	366	0.15	13.1
TkA03G466080	`PF15434`	FAM104	415	467	0.46	11.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFW8`	Arabidopsis thaliana	sp\|Q9SFW8\|NLP5_ARATH Protein NLP5	38.900%	Swiss-Prot	Medium
`Q9LE38`	Arabidopsis thaliana	sp\|Q9LE38\|NLP4_ARATH Protein NLP4	39.400%	Swiss-Prot	Medium
`Q8H111`	Arabidopsis thaliana	sp\|Q8H111\|NLP1_ARATH Protein NLP1	36.800%	Swiss-Prot	Medium
`Q7X9B9`	Arabidopsis thaliana	sp\|Q7X9B9\|NLP2_ARATH Protein NLP2	36.700%	Swiss-Prot	Medium
`Q10S83`	Oryza sativa subsp. japonica	sp\|Q10S83\|NLP1_ORYSJ Protein NLP1	36.700%	Swiss-Prot	Medium

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