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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G461330
Reference: TK1151 Chr: Chr03 Coordinates: 115186961-115191139 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3570 bp · TkA03G461330|TK1151|cDNA

ATAGTCTTAAAACATATTTATGAAAAGTTTTTTTTGAAAAAAATAGTTTTTGAAGTGCCCTAAATCACCCTGATTGGTATCAGGGTACGATTCCTTCATCTCAATGATGATGAAACTGAATCACAATGGATCTCTACGCTGACTTCAGACATTCATCTCCACCGGCGACTTCAAAGCTTCCACTTCCTACCGGCGACTTCACAGCTTCCATCACCCGACGACGCCCTCTTGAGCGCCGGCGACTTCACAGTTTTCTGCAA...

CDS

Download CDS FASTA

3045 bp · TkA03G461330|TK1151|CDS

ATGCCTGCAAATCGCAGCGGTAGTTACAGTGGTGGCCTTGTTGATCCCAGCAATCTCCATCTGAAAAAGGAGTTAACTCAGATTAGGAAAGCTGCTCGTACTTTACGAGATCCCGGTACGACTTCCTCCTGGCGGTCTCCGCTCAGCTCATCCAGATCCACCACTGCCGTCGCTATAGCAGCTTCCATCACCACTACCCCAAGCAACCATTATAATCACCACTACAGTTACAGTGTAGAAGAGAATAATGTTAACGAGAT...

Protein

Download Protein FASTA

1014 aa · TkA03G461330|TK1151|PROTEIN

MPANRSGSYSGGLVDPSNLHLKKELTQIRKAARTLRDPGTTSSWRSPLSSSRSTTAVAIAASITTTPSNHYNHHYSYSVEENNVNEISNNVSGSSNNHNTSRRKEKKVFLYNWKTQRSESERSASVENTRRLNLNGDGDDSLSDARNDRDLNNVDNRYALSSSSKMFSNCKGATSLMKKKPHSSSSALKLGQHRHLILPDQYDEVNSDDMVVKLSKLLRGGSRKDDSSYCYSTTPALSTSSFSKYWIRNPSTVGSWDAGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G461330
TK1151 IDTkA03G461330
OH-1004 IDLXL04_009667
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G461330
LocationChr03:115186961-115191139 (+)
DescriptionSimilar to At1g14460: Protein STICHEL-like 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g02480 Acts as a key regulator of trichome branching through an endoreduplication-independent pathway. No verified direct reference in this release
At1g14460 Protein STICHEL-like 1. No verified direct reference in this release
At4g24790 Protein STICHEL-like 2. No verified direct reference in this release
At5g45720 Protein STICHEL-like 4. No verified direct reference in this release
At4g18820 Protein STICHEL-like 3. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009667 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0010026 trichome differentiation Biological Process
GO:0010091 trichome branching Biological Process
GO:0005634 nucleus Cellular Component
GO:0005663 DNA replication factor C complex Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009360 DNA polymerase III complex Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G14460
ath:AT2G02480
ath:AT4G24790
ath:AT5G45720
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.429
Rank 1 · TkA03G461330 · TK1151
Cytoplasm0.287
Rank 2 · TkA03G461330 · TK1151
Cell membrane0.251
Rank 3 · TkA03G461330 · TK1151
Plastid0.083
Rank 4 · TkA03G461330 · TK1151
Endoplasmic reticulum0.063
Rank 5 · TkA03G461330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04851ResIII81-120 aa
PF05496RuvB_N406-459 aa
PF13177DNA_pol3_delta2416-573 aa
PF13191AAA_16423-458 aa
PF13401AAA_22435-551 aa
PF13604AAA_30435-541 aa
PF04851ResIII435-457 aa
PF00004AAA437-572 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G461330PF04851ResIII811200.4111.3
TkA03G461330PF05496RuvB_N4064590.0215.4
TkA03G461330PF13177DNA_pol3_delta24165731.3e-2384.5
TkA03G461330PF13191AAA_164234580.06114.6
TkA03G461330PF13401AAA_224355510.004318.1
TkA03G461330PF13604AAA_304355410.1212.8
TkA03G461330PF04851ResIII4354570.4111.3
TkA03G461330PF00004AAA4375721.9e-0835.5
TkA03G461330PF07728AAA_54374580.06214.0
TkA03G461330PF05496RuvB_N5115300.0215.4
TkA03G461330PF04851ResIII5135340.4111.3
TkA03G461330PF22608DNAX_ATPase_lid5796201.4e-0835.1
TkA03G461330PF21960RCF1-5-like_lid5836190.00916.7
TkA03G461330PF13604AAA_306276550.1212.8
TkA03G461330PF12169DNA_pol3_gamma36297116.2e-0730.0
TkA03G461330PF00004AAA7527781.9e-0835.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O64728Arabidopsis thalianasp|O64728|STI_ARATH Protein STICHEL46.200%Swiss-ProtMedium
F4HW65Arabidopsis thalianasp|F4HW65|STIL1_ARATH Protein STICHEL-like 145.900%Swiss-ProtMedium
F4JRP8Arabidopsis thalianasp|F4JRP8|STIL2_ARATH Protein STICHEL-like 240.200%Swiss-ProtLow
F4KEM0Arabidopsis thalianasp|F4KEM0|STIL4_ARATH Protein STICHEL-like 436.700%Swiss-ProtMedium
F4JRP0Arabidopsis thalianasp|F4JRP0|STIL3_ARATH Protein STICHEL-like 339.400%Swiss-ProtLow

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