TkA03G460590 | RubberDandelionOmics

Gene overview

TkA03G460590

Reference: TK1151 Chr: Chr03 Coordinates: 114943452-114948449 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3264 bp · TkA03G460590|TK1151|cDNA

GTAAATACGAAAGCAAAGAAAGGAACATTTGAATATTAATATTACAAGGAAATTTCAAAAGACTCCAACCGATCAAGGTCAATAATGGTAGTTAAATTTAACGGGTATGGTGGTTTCCTGTCTTCCTTCGTATTTCAATCTTCCACTCACAAATTACAAATATTACTGTTTCTCACGTCTACATCAATTGCGATATTTATAGAAACTTTAAATTTTCTCCGACATCTCTCAGAATTAAATGTCACCGTGAAACTGGTGAA...

CDS

Download CDS FASTA

2085 bp · TkA03G460590|TK1151|CDS

ATGACATTTGAGGCTGTAGATCATGATCATCACCATCAAGGTGTTGAAACGAAGAATATTTTGGTGGGAATTCGATTTGATGAATGTGGTCGAGAGCTTCTTGATTGGGCTATAGTGAAAGTTGCAGATGCCGGTGATCGTGTTATCGCCATTAACGTTTGTCGGAATTCAGACTCTGTATCGAAGTACAAGAGTTTGTTGGATGATTATTTGGCTGACTATGAAGGCCTTTGTGACCATAAACAGGTGGACCTTACGGG...

Protein

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694 aa · TkA03G460590|TK1151|PROTEIN

MTFEAVDHDHHHQGVETKNILVGIRFDECGRELLDWAIVKVADAGDRVIAINVCRNSDSVSKYKSLLDDYLADYEGLCDHKQVDLTGQVLIGNSVRKVLVKEAKFYSAAAVIVGVSKIKAFGGWLSIAKYCAKKLPLATEVLALHNGKVVFKRFSNGQLSGSMRDPRPSFYLIGKSHIKDTQSEFCESEVSEMGRHSSEGVKSLKDEDSDPFELRKKALSSVSVVIEDFAHQRPGWPLLRANTMLTPTAIEARKMSVVKW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G460590`
TK1151 ID	TkA03G460590
OH-1004 ID	LXL04_009659
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G460590

Location Chr03:114943452-114948449 (-)

Description Similar to RBK2: Receptor-like cytosolic serine/threonine-protein kinase RBK2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16750`	Promotes cell proliferation in the gibberellic acid (GA) signaling pathway, acting downstream of RGA, and possibly through a negative regulation of two cyclin-dependent kinase inhibitors SIM and SMR1.	No verified direct reference in this release
`At3g24550`	Proline-rich receptor-like protein kinase PERK1.	No verified direct reference in this release
`At3g05140`	Receptor-like cytosolic serine/threonine-protein kinase RBK2.	No verified direct reference in this release
`At3g24540`	Proline-rich receptor-like protein kinase PERK3.	No verified direct reference in this release
`At1g70460`	Negatively regulates root hair elongation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009659 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0051781 positive regulation of cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G10620

ath:AT2G16750

ath:AT3G05140

ath:AT3G24550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.568

Rank 1 · TkA03G460590 · TK1151

Cytoplasm0.304

Rank 2 · TkA03G460590 · TK1151

Nucleus0.290

Rank 3 · TkA03G460590 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA03G460590 · TK1151

Golgi apparatus0.031

Rank 5 · TkA03G460590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr12-45 aa

PF00582Usp17-136 aa

PF00069Pkinase342-609 aa

PF07714PK_Tyr_Ser-Thr344-611 aa

PF03109ABC1354-373 aa

PF03109ABC1458-488 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G460590	`PF07714`	PK_Tyr_Ser-Thr	12	45	3e-37	129.0
TkA03G460590	`PF00582`	Usp	17	136	3.2e-05	25.2
TkA03G460590	`PF00069`	Pkinase	342	609	1.8e-42	146.3
TkA03G460590	`PF07714`	PK_Tyr_Ser-Thr	344	611	3e-37	129.0
TkA03G460590	`PF03109`	ABC1	354	373	0.098	12.5
TkA03G460590	`PF03109`	ABC1	458	488	0.098	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`B5X4Z9`	Arabidopsis thaliana	sp\|B5X4Z9\|STU_ARATH Protein kinase STUNTED	45.900%	Swiss-Prot	Medium
`Q9LV48`	Arabidopsis thaliana	sp\|Q9LV48\|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1	41.900%	Swiss-Prot	Medium
`Q8RXC8`	Arabidopsis thaliana	sp\|Q8RXC8\|RBK2_ARATH Receptor-like cytosolic serine/threonine-protein kinase RBK2	41.100%	Swiss-Prot	Medium
`Q1PEM5`	Arabidopsis thaliana	sp\|Q1PEM5\|PERK3_ARATH Proline-rich receptor-like protein kinase PERK3	40.500%	Swiss-Prot	Medium
`Q9CAL8`	Arabidopsis thaliana	sp\|Q9CAL8\|PEK13_ARATH Proline-rich receptor-like protein kinase PERK13	41.100%	Swiss-Prot	Medium

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