Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1820 bp · TkA03G454280|TK1151|cDNA
ATTGGTTTTACTTTTTAGACCGGCCCACACCAAGATAACCAGATCCAATGAACAAGCCCAGTATTGAATGTAATAGGAAGTAGGCACACTGCTACTGCTAGGAGAGAAGGGGTTGGAGAGAGAGAGAGAGAGAGACGGCGAGAACGAGAAGGCAACCTGATCCTCCGCGTCTGTTTCTTCATCGGCGCTAACGGAGTTGGGACTAGGACGTTTTGTTTTTCGATTCTTGCTCGTTTTGTCGATCTCCAGATGGTTGCTGT...
1503 bp · TkA03G454280|TK1151|CDS
ATGGATAAAGCTGATGATTTGACTTTTAGGATTATTTTCTCGGGAGATGGAGCTGGAAGGTTGCGGGACAAAGTGAAGGAAAAGCTCAAGGAGTTTATGGGAGACTACACAGATGACACTCTTGTGGAATATGTGATTGTATTGCTTAAAAACGGAAGGCGCAAAGAAGAAGCAAAGAATGAGTTAAACGTCTTTTTGGGTGATGACAGCGACTCTTTTGTATCATGGTTGTGGGACCACCTGGGATCAAATCTAAATTT...
Protein
Download Protein FASTA500 aa · TkA03G454280|TK1151|PROTEIN
MDKADDLTFRIIFSGDGAGRLRDKVKEKLKEFMGDYTDDTLVEYVIVLLKNGRRKEEAKNELNVFLGDDSDSFVSWLWDHLGSNLNLYSQAQPQAKDEAVKQKKEDDLETEGTIKSKKRVSKDWRGVMRDPDEQPPPPPLRSAVIANIHPKDDNTPQPLTQRKRGRSTSAERHDDEASQLKFQPKPSLGASRRLLQFAVRDAVATSRSTSGLTLTSEPSFKRLRSVVSTPNEPDRPKIRSVARVPKSMAVAIKAVADAAK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G454280 |
|---|---|
| TK1151 ID | TkA03G454280 |
| OH-1004 ID | LXL04_034460 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 89.200 |
| Protein coverage (%) | TK1151 97.600 / OH-1004 75.039Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G454280 |
|---|---|
| Location | Chr03:113357969-113363990 (+) |
| Description | Similar to PABPN1L: Embryonic polyadenylate-binding protein 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000165 MAPK cascade Biological Process GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Biological Process GO:0031124 mRNA 3'-end processing Biological Process GO:0071222 cellular response to lipopolysaccharide Biological Process GO:1904247 positive regulation of polynucleotide adenylyltransferase activity Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016607 nuclear speck Cellular Component GO:0042405 nuclear inclusion body Cellular Component GO:1990904 ribonucleoprotein complex Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function |
| KEGG gene cross-reference | ath:AT5G65260 ddi:DDB_G0277371 hsa:390748 xla:398201 xtr:407911 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11517Nab220-86 aaPF01480PWI25-82 aaPF00076RRM_1433-488 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G454280 | PF11517 | Nab2 | 20 | 86 | 0.00036 | 21.5 |
| TkA03G454280 | PF01480 | PWI | 25 | 82 | 4.2e-07 | 30.9 |
| TkA03G454280 | PF00076 | RRM_1 | 433 | 488 | 1.1e-10 | 41.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.