LXL04_034460 | RubberDandelionOmics

Gene overview

LXL04_034460

Reference: OH-1004 Chr: Chr07 Coordinates: 101574063-101578664 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1902 bp · LXL04_034460|LXL04_034460|OH1004|cDNA

ATGGTTGCTGGTAAACATTGCTTACTATGTGTAGGTATCGACAGCTGGCAGGATTGGACTCGAGGAGTGGTTTATCGGAAGGATTTGGAAACACAAAAAGGGTTGATGGATAAAGCTGATGATTTGACTTTTAGGATTATTTTCTCGGGAGATGGAGCTGGAAGGTTGCGGGACAAAGTGAAGGAAAAGCTCAAGGAGTTTATGGGAGACTACACAGATGACACTCTTGTGGAATATGTGATTGTATTGCTTAAAAACGG...

CDS

Download CDS FASTA

1902 bp · LXL04_034460|LXL04_034460|OH1004|CDS

ATGGTTGCTGGTAAACATTGCTTACTATGTGTAGGTATCGACAGCTGGCAGGATTGGACTCGAGGAGTGGTTTATCGGAAGGATTTGGAAACACAAAAAGGGTTGATGGATAAAGCTGATGATTTGACTTTTAGGATTATTTTCTCGGGAGATGGAGCTGGAAGGTTGCGGGACAAAGTGAAGGAAAAGCTCAAGGAGTTTATGGGAGACTACACAGATGACACTCTTGTGGAATATGTGATTGTATTGCTTAAAAACGG...

Protein

Download Protein FASTA

633 aa · LXL04_034460|LXL04_034460|OH1004|PROTEIN

MVAGKHCLLCVGIDSWQDWTRGVVYRKDLETQKGLMDKADDLTFRIIFSGDGAGRLRDKVKEKLKEFMGDYTDDTLVEYVIVLLKNGRRKEEAKNELWDHLRSNLNLYSQAQPQAKDEAVKQKKEDDLETEGTIKSKKRVSKDWRGVMRDPDEQPPPPPLRSAVIANIHPKDDNTPQPLTQRKRGRSTSAERHDDETSQLKVKPKPSLGASRRLLQFAVRDAVATSRSTSGLTLTSEPSFKRLRSVVSTPNEPDRPKIRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034460`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_034460

Location Chr07:101574063-101578664 (-)

Description Similar to PABPN1L: Embryonic polyadenylate-binding protein 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65260`	Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034460 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000165 MAPK cascade Biological Process

GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Biological Process

GO:0031124 mRNA 3'-end processing Biological Process

GO:0071222 cellular response to lipopolysaccharide Biological Process

GO:1904247 positive regulation of polynucleotide adenylyltransferase activity Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0042405 nuclear inclusion body Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G65260

ddi:DDB_G0277371

hsa:390748

xla:398201

xtr:407911

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.872

Rank 1 · LXL04_034460 · OH-1004

Cytoplasm0.158

Rank 2 · LXL04_034460 · OH-1004

Cell membrane0.045

Rank 3 · LXL04_034460 · OH-1004

Endoplasmic reticulum0.033

Rank 4 · LXL04_034460 · OH-1004

Plastid0.013

Rank 5 · LXL04_034460 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_1454-522 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034460	`PF00076.29`	RRM_1	454	522	3.9e-17	62.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJN9`	Arabidopsis thaliana	Polyadenylate-binding protein 2	42.391%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card