Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_034460 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:101574063-101578664 (-) |
| Description | Similar to PABPN1L: Embryonic polyadenylate-binding protein 2 (Homo sapiens OX%3D9606) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_034460 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g65260 |
Involved in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000165 | MAPK cascade | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000288 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.014; coverage=23.223; evalue=3.06e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031124 | mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071222 | cellular response to lipopolysaccharide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904247 | positive regulation of polynucleotide adenylyltransferase activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.014; coverage=23.223; evalue=3.06e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.391; coverage=14.534; evalue=1.64e-14; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042405 | nuclear inclusion body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.391; coverage=14.534; evalue=1.64e-14; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008143 | poly(A) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.014; coverage=23.223; evalue=3.06e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070063 | RNA polymerase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G65260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.391; coverage=14.534; evalue=1.64e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0277371 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.741; coverage=12.796; evalue=1.88e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:390748 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.014; coverage=23.223; evalue=3.06e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:398201 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=45.0; coverage=12.638; evalue=1.1e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:407911 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.0; coverage=12.638; evalue=1.86e-14 | UniProtKB/Swiss-Prot DAT 2026 current_release |