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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G441790
Reference: TK1151 Chr: Chr03 Coordinates: 110088061-110089372 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

792 bp · TkA03G441790|TK1151|cDNA

ATGTCGAAGGCGAGGCGTCGCCTCGCAAAGATGGAGTTATCCCCTTCGGTTTCTAAATCGCACAATTCCCTCCTCTTCTCCTCTTCTCCTCTTCAGTCGACACTCGACATTCGTGAATACTCGGACTGTTTTCCGATCACTCTTCGGGACCCAGTAGAACTGCCAGCCAGGAAATTTCCCCTTCAGAGTCTCAGCATAAAACAGAGAACGATTATACTCCAAAGGGGACTTGCTGATCGGTCTCCAGCTGTCACCAAAGA...

CDS

Download CDS FASTA

645 bp · TkA03G441790|TK1151|CDS

ATGTCGAAGGCGAGGCGTCGCCTCGCAAAGATGGAGTTATCCCCTTCGGTTTCTAAATCGCACAATTCCCTCCTCTTCTCCTCTTCTCCTCTTCAGTCGACACTCGACATTCGTGAATACTCGGACTGTTTTCCGATCACTCTTCGGGACCCAGTAGAACTGCCAGCCAGGAAATTTCCCCTTCAGAGTCTCAGCATAAAACAGAGAACGATTATACTCCAAAGGGGACTTGCTGATCGGTCTCCAGCTGTCACCAAAGA...

Protein

Download Protein FASTA

214 aa · TkA03G441790|TK1151|PROTEIN

MSKARRRLAKMELSPSVSKSHNSLLFSSSPLQSTLDIREYSDCFPITLRDPVELPARKFPLQSLSIKQRTIILQRGLADRSPAVTKECLKLLKDEWLMKSCNANPIELLKYLDVETYESIGVSVMEALLKSGLVKLHGGQSINQFLSSNSNTTEDHSVQQVDAKVALYLRTLCKHLQTEAQSKGSDAAMTSGSEAVVYASEASDSNEYRKSIIR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G441790
TK1151 IDTkA03G441790
OH-1004 IDLXL04_009487
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)86.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G441790
LocationChr03:110088061-110089372 (+)
DescriptionSimilar to NCAPG: Condensin complex subunit 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009487 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007076 mitotic chromosome condensation Biological Process
GO:0051301 cell division Biological Process
GO:0051984 positive regulation of chromosome segregation Biological Process
GO:1905820 positive regulation of chromosome separation Biological Process
GO:1905821 positive regulation of chromosome condensation Biological Process
GO:0000779 condensed chromosome, centromeric region Cellular Component
GO:0000793 condensed chromosome Cellular Component
GO:0000794 condensed nuclear chromosome Cellular Component
GO:0000796 condensin complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
hsa:64151
xla:398088
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.751
Rank 1 · TkA03G441790 · TK1151
Cytoplasm0.296
Rank 2 · TkA03G441790 · TK1151
Mitochondrion0.038
Rank 3 · TkA03G441790 · TK1151
Cell membrane0.031
Rank 4 · TkA03G441790 · TK1151
Golgi apparatus0.026
Rank 5 · TkA03G441790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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