TkA03G418200 | RubberDandelionOmics

Gene overview

TkA03G418200

Reference: TK1151 Chr: Chr03 Coordinates: 104081571-104083119 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

930 bp · TkA03G418200|TK1151|cDNA

ATATACTCCACTTTAACCTCTTCTTCCATCACCGAATCAATCCACAAAGGTATATTCGTAAACCCTAAAGAGAGAAAACGCAGGAGTGCGAGTGTATGTTTGTGAGGTAAAGATCGCAAAAATCTGCGTTAGCCATTTCCGTCTTTACAAGCCCCAATTGAGAAGAAGATGGTGGACTTTAGTAGAGTGCAAAAGGAGCTTCAAGAATGTAACAGAGACATCAATGTCTCGGGTATCAGCGTAAACCCTAAATCCGACAA...

CDS

Download CDS FASTA

618 bp · TkA03G418200|TK1151|CDS

ATGGTGGACTTTAGTAGAGTGCAAAAGGAGCTTCAAGAATGTAACAGAGACATCAATGTCTCGGGTATCAGCGTAAACCCTAAATCCGACAATCTCACCAATTTGATCGGCACAATTCCCGGCCCAATCGGTACTCCGTACGAAGGCGGAACTTTCAAGATTGATATTAATTTACCTGGTACATCAATTGATTTATGTCGTATAATTGCAGATGGATACCCATTCGAGCCACCAAAGATGAAATTTGCAACTAAAGTTTG...

Protein

Download Protein FASTA

205 aa · TkA03G418200|TK1151|PROTEIN

MVDFSRVQKELQECNRDINVSGISVNPKSDNLTNLIGTIPGPIGTPYEGGTFKIDINLPGTSIDLCRIIADGYPFEPPKMKFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSIQALLSAPEPDDPQDAVVAQQYLKDYQTFASTARYWTESFAKISSLGVEEKVQKLVEMGFPEGLVRSTLEVVGGDENMALEKLCSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G418200`
TK1151 ID	TkA03G418200
OH-1004 ID	LXL04_009318
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G418200

Location Chr03:104081571-104083119 (+)

Description Similar to UBC27: Ubiquitin-conjugating enzyme E2 27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50870`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009318 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0010800 positive regulation of peptidyl-threonine phosphorylation Biological Process

GO:0010994 free ubiquitin chain polymerization Biological Process

GO:0016050 vesicle organization Biological Process

GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0035458 cellular response to interferon-beta Biological Process

GO:0036503 ERAD pathway Biological Process

GO:0060337 type I interferon-mediated signaling pathway Biological Process

GO:0060340 positive regulation of type I interferon-mediated signaling pathway Biological Process

GO:0070936 protein K48-linked ubiquitination Biological Process

GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT5G50870

cel:CELE_C06E2.3

mmu:53323

sce:YDR177W

spo:2540277

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · TkA03G418200 · TK1151

Nucleus0.582

Rank 2 · TkA03G418200 · TK1151

Endoplasmic reticulum0.049

Rank 3 · TkA03G418200 · TK1151

Cell membrane0.049

Rank 4 · TkA03G418200 · TK1151

Mitochondrion0.048

Rank 5 · TkA03G418200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00179UQ_con6-155 aa

PF27606UBA_Ucp1262-70 aa

PF27606UBA_Ucp12164-202 aa

PF00627UBA168-202 aa

PF22562UBA_7169-185 aa

PF21267UBA2_UBAP-1171-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G418200	`PF00179`	UQ_con	6	155	8.3e-42	142.8
TkA03G418200	`PF27606`	UBA_Ucp12	62	70	2e-05	25.0
TkA03G418200	`PF27606`	UBA_Ucp12	164	202	2e-05	25.0
TkA03G418200	`PF00627`	UBA	168	202	4.3e-05	24.0
TkA03G418200	`PF22562`	UBA_7	169	185	0.13	12.9
TkA03G418200	`PF21267`	UBA2_UBAP-1	171	202	0.17	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FI61`	Arabidopsis thaliana	sp\|Q9FI61\|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27	79.900%	Swiss-Prot	High

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