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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G418050
Reference: TK1151 Chr: Chr03 Coordinates: 104022073-104023737 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1665 bp · TkA03G418050|TK1151|cDNA

ATGAAGCTGTCGGAAAATGAAGCCGACGTCGTCGAGGCCTCTAACCTCCAGCTTCTTCAATCTCTACTCGACTCAATCCCCCACACCGTCTCCTTCAAAGGAAAATGGTCTCTCATCGGAACGAAGCTTTCCGATCTCAAATCCAAACTTTCCGACCTCTCCGACTTCCCCTCCAACTCCCTCTCCGTCGATATCCTCCATTCCCTCTCCCAAACACTCTCTCAAGCACTTTCCTTGTCACTCATTTGTCACAGCGCCAA...

CDS

Download CDS FASTA

1665 bp · TkA03G418050|TK1151|CDS

ATGAAGCTGTCGGAAAATGAAGCCGACGTCGTCGAGGCCTCTAACCTCCAGCTTCTTCAATCTCTACTCGACTCAATCCCCCACACCGTCTCCTTCAAAGGAAAATGGTCTCTCATCGGAACGAAGCTTTCCGATCTCAAATCCAAACTTTCCGACCTCTCCGACTTCCCCTCCAACTCCCTCTCCGTCGATATCCTCCATTCCCTCTCCCAAACACTCTCTCAAGCACTTTCCTTGTCACTCATTTGTCACAGCGCCAA...

Protein

Download Protein FASTA

554 aa · TkA03G418050|TK1151|PROTEIN

MKLSENEADVVEASNLQLLQSLLDSIPHTVSFKGKWSLIGTKLSDLKSKLSDLSDFPSNSLSVDILHSLSQTLSQALSLSLICHSANPPGGKLKTQNEVDSISAKVDSHIKDCEVLITSGVLHDGVVSTSSTSVSKRESIRVESRNLITRLQIGSNESRNSALDSLLGLLQEDDKNVLIAVAQGVVPVLVRLLDSSSTSEIKEKTVTAIARVSTVDSSKHVLIAEGLLLLHHLLRILESGSGFAKEKACITLNALSNTKE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G418050
TK1151 IDTkA03G418050
OH-1004 IDLXL04_009312
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G418050
LocationChr03:104022073-104023737 (+)
DescriptionSimilar to PUB13: U-box domain-containing protein 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009312 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G23030
ath:AT1G71020
ath:AT2G28830
ath:AT3G46510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.579
Rank 1 · TkA03G418050 · TK1151
Nucleus0.326
Rank 2 · TkA03G418050 · TK1151
Cell membrane0.166
Rank 3 · TkA03G418050 · TK1151
Endoplasmic reticulum0.049
Rank 4 · TkA03G418050 · TK1151
Lysosome / Vacuole0.048
Rank 5 · TkA03G418050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23005DUF703215-121 aa
PF30746TMCO656-79 aa
PF25598ARM_PUB146-266 aa
PF30746TMCO6146-214 aa
PF13513HEAT_EZ159-212 aa
PF13646HEAT_2161-183 aa
PF02985HEAT163-184 aa
PF24768ARM_ARMC5166-340 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G418050PF23005DUF7032151216.1e-32110.5
TkA03G418050PF30746TMCO656790.1111.9
TkA03G418050PF25598ARM_PUB1462669.8e-1245.6
TkA03G418050PF30746TMCO61462140.1111.9
TkA03G418050PF13513HEAT_EZ1592121.2e-0939.2
TkA03G418050PF13646HEAT_21611830.0005920.8
TkA03G418050PF02985HEAT1631840.9910.6
TkA03G418050PF24768ARM_ARMC51663401.1e-1971.7
TkA03G418050PF30699ARM_GAC_21692200.008315.2
TkA03G418050PF00514Arm1742102.1e-1763.2
TkA03G418050PF28415SIL1_FES1_HPBP1_C1792120.06713.3
TkA03G418050PF13646HEAT_21842180.0005920.8
TkA03G418050PF02985HEAT1852130.9910.6
TkA03G418050PF04826Arm_21883842.5e-0834.4
TkA03G418050PF23005DUF70322222616.1e-32110.5
TkA03G418050PF24768ARM_ARMC52254531.1e-1971.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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