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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G405150
Reference: TK1151 Chr: Chr03 Coordinates: 100746305-100749240 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2075 bp · TkA03G405150|TK1151|cDNA

AATAAGCCTTGGATTTTGACTATAAAAAGAAAAATAAAAAATAAACTAGGAAAATAAATCTTGATTCCAGTGGCAAACATGAATCTCGATTCCTAATTTGCCATCCGCCGCAGTTAAACCGCCGGTGAAAGCCGTTCTCTTATCCGTCTTTTCATCCTCTGCTTCCAAACCCTAAATTCGAAACCCTATCCGTTTCCCCAATATTCGATCATTCAATTGGAAGCAAATTTATCAGTTTTTCGGACAGAATCACCTCCAAA...

CDS

Download CDS FASTA

1488 bp · TkA03G405150|TK1151|CDS

ATGGTGTTGGCGGAACTAGGGGGGAGCATTTCACGTGCTCTCCAGCAGATGAGCAATGCCACGATCATCGATGAGAAGGTTCTTAACGATTGCTTAAATGAAATCACTCGCGCTCTTCTCCAGTCCGATGTTCAATTCAAGCTCGTTCGTGAAATGCAAACTAATATTAAGAAGATCGTCAATCTCGATGATCTCGCTGCAGGCCATAACAAGCGAAAAATCATCCAACAGGCTATATTCAACGAGCTCTGCAAGATGTT...

Protein

Download Protein FASTA

495 aa · TkA03G405150|TK1151|PROTEIN

MVLAELGGSISRALQQMSNATIIDEKVLNDCLNEITRALLQSDVQFKLVREMQTNIKKIVNLDDLAAGHNKRKIIQQAIFNELCKMLDPGKPSFTPKKSKPSVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEVALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G405150
TK1151 IDTkA03G405150
OH-1004 IDLXL04_009171
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G405150
LocationChr03:100746305-100749240 (+)
DescriptionSimilar to Signal recognition particle 54 kDa protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g48900 Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009171 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005786 signal recognition particle, endoplasmic reticulum targeting Cellular Component
GO:0005829 cytosol Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0008312 7S RNA binding Molecular Function
GO:0030942 endoplasmic reticulum signal peptide binding Molecular Function
KEGG gene cross-reference
ath:AT1G48900
sly:544156
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.387
Rank 1 · TkA03G405150 · TK1151
Mitochondrion0.329
Rank 2 · TkA03G405150 · TK1151
Endoplasmic reticulum0.172
Rank 3 · TkA03G405150 · TK1151
Nucleus0.121
Rank 4 · TkA03G405150 · TK1151
Peroxisome0.099
Rank 5 · TkA03G405150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02881SRP54_N6-83 aa
PF00465Fe-ADH19-56 aa
PF13401AAA_2225-70 aa
PF02978SRP_SPB34-65 aa
PF01583APS_kinase35-65 aa
PF00004AAA48-92 aa
PF03029ATP_bind_152-87 aa
PF04851ResIII76-218 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G405150PF02881SRP54_N6835.1e-1452.9
TkA03G405150PF00465Fe-ADH19560.01415.7
TkA03G405150PF13401AAA_2225700.05514.5
TkA03G405150PF02978SRP_SPB34657.1e-38130.5
TkA03G405150PF01583APS_kinase35650.2612.0
TkA03G405150PF00004AAA48920.007317.5
TkA03G405150PF03029ATP_bind_152870.1912.2
TkA03G405150PF04851ResIII762180.003418.0
TkA03G405150PF06414Zeta_toxin951420.01715.3
TkA03G405150PF25199nSTAND_NTPase5961400.04214.4
TkA03G405150PF13245AAA_19992010.003518.2
TkA03G405150PF13401AAA_221001360.05514.5
TkA03G405150PF00448SRP541012964.1e-78262.3
TkA03G405150PF01583APS_kinase1011510.2612.0
TkA03G405150PF20720nSTAND31021350.001818.7
TkA03G405150PF09439SRPRB1021200.006416.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P49967Arabidopsis thalianasp|P49967|SR543_ARATH Signal recognition particle subunit SRP54 389.100%Swiss-ProtHigh

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