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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G399110
Reference: TK1151 Chr: Chr03 Coordinates: 99190360-99198085 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4097 bp · TkA03G399110|TK1151|cDNA

TAGGTACCGTACTTTCCCCATGGTTTAGTAAAAGGGAGGGGAGATTTTATCCTGATCCGGGAGTTCATTTCATTCATTATGAAGTCAAAAATGAAGGTCTTAAAAACTTCATAGAATTCATGATCGGCCATTCCATTTGTGCTTTCAGCAAGTAGGCGACGCGAATCTATTTCTATGCTTCAATCGGATACCAATTGCTTGGATGTGTTTGAAGCCTCGAGATGACTTGCAGAAAAAAAGCTTTCTAGGAAAACTGGCAC...

CDS

Download CDS FASTA

2319 bp · TkA03G399110|TK1151|CDS

ATGGTGGATCTTCAACTGGACGAGAATCAACTCGAGGGTGGTATTTTAAGTGAGTTTGGTTTACTGAAGTTGAGAAAGCTTTATTTGTTTACGAACCGTTTGACGGGTGAGATTCCGATGAGTATCTGGAAAATTGAAACCCTGGAACACCTTCTTCTTTACGAAAATAGTCTTTTTGGTGAACTACCAATTGAAGTCACTTATATGAAGAAGCTGACAAAGATTACTCTGTTTCATAATCATTTCTCCGGCGTCATACC...

Protein

Download Protein FASTA

772 aa · TkA03G399110|TK1151|PROTEIN

MVDLQLDENQLEGGILSEFGLLKLRKLYLFTNRLTGEIPMSIWKIETLEHLLLYENSLFGELPIEVTYMKKLTKITLFHNHFSGVIPQTLGINSSLTLLDFTNNSFTGPIPPNLCFRKQLQKLTLGFNPLEGGIPSELENCPNLLRLGLENTNLTGVLLEFVNTPRLYYLNLENNRLSGEIPASIGKLPNISQIVLSMNRFSGVLPKELGNLLQLHVLNLSHNEFEGPLPSQLANCRRLLDFDASHNMLHGSIPSAFQSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G399110
TK1151 IDTkA03G399110
OH-1004 IDLXL04_009117
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 54.663 / OH-1004 38.539
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G399110
LocationChr03:99190360-99198085 (-)
DescriptionSimilar to INRPK1: Receptor-like protein kinase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73080 Acts as a receptor for PEP defense peptides.
The cell surface leucine-rich repeat receptor for AtPep1, an endogenous peptide elicitor in Arabidopsis, is functional in transgenic tobacco cells.2006 · DOI: 10.1073/pnas.0603729103
BIK1 interacts with PEPRs to mediate ethylene-induced immunity.2013 · DOI: 10.1073/pnas.1215543110
At1g17750 Acts as a receptor for PEP defense peptides. No verified direct reference in this release
At5g63930 Probable leucine-rich repeat receptor-like protein kinase At5g63930. No verified direct reference in this release
At1g17230 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0203800 Receptor kinase involved in the regulation of thermotolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009117 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0006955 immune response Biological Process
GO:0009611 response to wounding Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G17230
ath:AT1G17750
ath:AT1G73080
ath:AT5G63930
ini:109187519
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.878
Rank 1 · TkA03G399110 · TK1151
Endoplasmic reticulum0.082
Rank 2 · TkA03G399110 · TK1151
Cytoplasm0.066
Rank 3 · TkA03G399110 · TK1151
Nucleus0.038
Rank 4 · TkA03G399110 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA03G399110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_14-20 aa
PF12799LRR_45-35 aa
PF13855LRR_819-58 aa
PF23598LRR_1421-200 aa
PF25019LRR_R13L1-DRL2121-53 aa
PF00560LRR_123-44 aa
PF12799LRR_423-56 aa
PF24048LRR_NXF1-523-73 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G399110PF00560LRR_14207.6e-36115.1
TkA03G399110PF12799LRR_45352.4e-1660.1
TkA03G399110PF13855LRR_819581.1e-2073.9
TkA03G399110PF23598LRR_14212009e-1658.3
TkA03G399110PF25019LRR_R13L1-DRL2121532.78.6
TkA03G399110PF00560LRR_123447.6e-36115.1
TkA03G399110PF12799LRR_423562.4e-1660.1
TkA03G399110PF24048LRR_NXF1-523732.48.5
TkA03G399110PF24758LRR_At5g5637024820.0215.3
TkA03G399110PF12799LRR_447802.4e-1660.1
TkA03G399110PF00560LRR_148667.6e-36115.1
TkA03G399110PF25019LRR_R13L1-DRL21671012.78.6
TkA03G399110PF12799LRR_4701052.4e-1660.1
TkA03G399110PF00560LRR_171917.6e-36115.1
TkA03G399110PF13855LRR_8711301.1e-2073.9
TkA03G399110PF00560LRR_1951157.6e-36115.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSL9Arabidopsis thalianasp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR151.200%Swiss-ProtMedium
Q9FZ59Arabidopsis thalianasp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR246.600%Swiss-ProtMedium
Q9LVP0Arabidopsis thalianasp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g6393040.800%Swiss-ProtMedium
Q9SHI2Arabidopsis thalianasp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g1723038.900%Swiss-ProtLow
Q69SP5Oryza sativa subsp. japonicasp|Q69SP5|EREC1_ORYSJ LRR receptor-like serine/threonine-protein kinase ER139.500%Swiss-ProtMedium

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