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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_009117
Reference: OH-1004 Chr: Chr02 Coordinates: 118091871-118095396 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3288 bp · LXL04_009117|LXL04_009117|OH1004|cDNA

ATGCTCTCTGAACAGAATCGATTTCTAGTTCAAATATGGTTGCCGTTGACTGAAACCATTCCTTGTGGCATTTCAAAAGAAAACGATGATTATCTTGGGGAGAAACACGTGATAATTTGGGGTGATTTGACAGAAATTCGAACGTTACTGTCACTCTCAACCCACTGGAATTCTATTCCGCCATTATTATCAACCTGGAATTCTTCTGATGCAAATCCTTGTTCgtggtttggtgttctttgCGACGATAACAAGTCCGT...

CDS

Download CDS FASTA

3288 bp · LXL04_009117|LXL04_009117|OH1004|CDS

ATGCTCTCTGAACAGAATCGATTTCTAGTTCAAATATGGTTGCCGTTGACTGAAACCATTCCTTGTGGCATTTCAAAAGAAAACGATGATTATCTTGGGGAGAAACACGTGATAATTTGGGGTGATTTGACAGAAATTCGAACGTTACTGTCACTCTCAACCCACTGGAATTCTATTCCGCCATTATTATCAACCTGGAATTCTTCTGATGCAAATCCTTGTTCGTGGTTTGGTGTTCTTTGCGACGATAACAAGTCCGT...

Protein

Download Protein FASTA

1095 aa · LXL04_009117|LXL04_009117|OH1004|PROTEIN

MLSEQNRFLVQIWLPLTETIPCGISKENDDYLGEKHVIIWGDLTEIRTLLSLSTHWNSIPPLLSTWNSSDANPCSWFGVLCDDNKSVVSLHLSNSQISGEIGPEISRLTQLKFLNLSSNHLSGQIPSQIANCSRLQELDMSRNLLTGKIPNSFGNLRLKSLSLSDNLLNGSIPQSIFHIPNLEVLLLSFNQLTGLIPSNLGNATMLQRLHLDNNQFTGSLPDSLNNLDNLVFLDVHEGGVEGRIPFGNNGCKKLIYLDIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_009117
TK1151 IDTkA03G399110
OH-1004 IDLXL04_009117
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 54.663 / OH-1004 38.539
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_009117
LocationChr02:118091871-118095396 (-)
DescriptionSimilar to INRPK1: Receptor-like protein kinase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73080 Acts as a receptor for PEP defense peptides.
The cell surface leucine-rich repeat receptor for AtPep1, an endogenous peptide elicitor in Arabidopsis, is functional in transgenic tobacco cells.2006 · DOI: 10.1073/pnas.0603729103
BIK1 interacts with PEPRs to mediate ethylene-induced immunity.2013 · DOI: 10.1073/pnas.1215543110
At1g17750 Acts as a receptor for PEP defense peptides. No verified direct reference in this release
At5g63930 Probable leucine-rich repeat receptor-like protein kinase At5g63930. No verified direct reference in this release
At1g17230 Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009117 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0006955 immune response Biological Process
GO:0009611 response to wounding Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G17230
ath:AT1G17750
ath:AT1G73080
ath:AT5G63930
ini:109187519
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.864
Rank 1 · LXL04_009117 · OH-1004
Endoplasmic reticulum0.087
Rank 2 · LXL04_009117 · OH-1004
Cytoplasm0.063
Rank 3 · LXL04_009117 · OH-1004
Nucleus0.039
Rank 4 · LXL04_009117 · OH-1004
Lysosome / Vacuole0.029
Rank 5 · LXL04_009117 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_244-82 aa
PF12799.14LRR_486-125 aa
PF23598.2LRR_14104-238 aa
PF12799.14LRR_4109-145 aa
PF13855.13LRR_8110-168 aa
PF13855.13LRR_8180-235 aa
PF23598.2LRR_14253-353 aa
PF13855.13LRR_8489-548 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_009117PF08263.18LRRNT_244823.7e-0937.4
LXL04_009117PF12799.14LRR_4861251.1e-32112.0
LXL04_009117PF23598.2LRR_141042386.6e-30104.8
LXL04_009117PF12799.14LRR_41091451.1e-32112.0
LXL04_009117PF13855.13LRR_81101685.5e-38129.2
LXL04_009117PF13855.13LRR_81802355.5e-38129.2
LXL04_009117PF23598.2LRR_142533536.6e-30104.8
LXL04_009117PF13855.13LRR_84895485.5e-38129.2
LXL04_009117PF13855.13LRR_85706215.5e-38129.2
LXL04_009117PF23598.2LRR_145846836.6e-30104.8
LXL04_009117PF13855.13LRR_85876455.5e-38129.2
LXL04_009117PF13855.13LRR_86346915.5e-38129.2
LXL04_009117PF00069.32Pkinase80910811.3e-43150.0
LXL04_009117PF07714.24PK_Tyr_Ser-Thr81110834e-39135.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSL9Arabidopsis thalianaLeucine-rich repeat receptor-like protein kinase PEPR147.708%Swiss-Protmoderate database homology
Q9FZ59Arabidopsis thalianaLeucine-rich repeat receptor-like protein kinase PEPR247.974%Swiss-Protmoderate database homology
Q9LVP0Arabidopsis thalianaProbable leucine-rich repeat receptor-like protein kinase At5g6393038.534%Swiss-Protmoderate database homology
Q9SHI2Arabidopsis thalianaLeucine-rich repeat receptor-like serine/threonine-protein kinase At1g1723036.971%Swiss-Protmoderate database homology

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