TkA03G386300 | RubberDandelionOmics

Gene overview

TkA03G386300

Reference: TK1151 Chr: Chr03 Coordinates: 95571793-95573136 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1054 bp · TkA03G386300|TK1151|cDNA

TTTCCCTACCTATAAATAGCCCTCTTCCTCGTACCATCTTTCTTCAACAGCAACCACCGATCAAATACTCTACAGCTCCGGCGACGATGTCTGGAATTGTGGTAATTTTCGACTTTGACAAGACGATAATTGACGTGGACAGCGACAATTGGGTGGTGGACGAGTTATGTGCCACTGATATGTTCAATCAACTCCTCCCCTCCATGCCCTGGAATTCTCTCATGGACAAAATGATGGAGGAGTTACATTTACAAGGCAAG...

CDS

Download CDS FASTA

825 bp · TkA03G386300|TK1151|CDS

ATGTCTGGAATTGTGGTAATTTTCGACTTTGACAAGACGATAATTGACGTGGACAGCGACAATTGGGTGGTGGACGAGTTATGTGCCACTGATATGTTCAATCAACTCCTCCCCTCCATGCCCTGGAATTCTCTCATGGACAAAATGATGGAGGAGTTACATTTACAAGGCAAGACGGTCGAGGATATTGAAAATGTACTTAACCGTGTGCCTATACATCCTCGGGTGGTTCCCACCATTAAAGCTGCTTATGCATCAGG...

Protein

Download Protein FASTA

274 aa · TkA03G386300|TK1151|PROTEIN

MSGIVVIFDFDKTIIDVDSDNWVVDELCATDMFNQLLPSMPWNSLMDKMMEELHLQGKTVEDIENVLNRVPIHPRVVPTIKAAYASGCDLRVVSDANTFYIETILNHLGIRECFSEINTNPGFVDEEGKLRIMPYHDFHKSDHGCNLCPPNMCKGKVIERIQSTVTANKRIIYLGDGAGDFCPSIKLVEGDYMMPRKDFPAWKLICENRKLVKAEVYEWSDGEDMERILLQLIASIISIEEDIENCVDNSNQLFDCKFEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G386300`
TK1151 ID	TkA03G386300
OH-1004 ID	LXL04_008313
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 85.358 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G386300

Location Chr03:95571793-95573136 (+)

Description Similar to At1g17710: Inorganic pyrophosphatase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17710`	Catalyzes the specific cleavage of pyrophosphate.	No verified direct reference in this release
`At1g73010`	Catalyzes the specific cleavage of pyrophosphate.	The Arabidopsis thaliana phosphate starvation responsive gene AtPPsPase1 encodes a novel type of inorganic pyrophosphatase.2011 · DOI: 10.1016/j.bbagen.2010.11.006
`At4g29530`	HAD-like hydrolase that has a thiamine monophosphate phosphatase activity in a heterologous system.	Bacterial and plant HAD enzymes catalyse a missing phosphatase step in thiamin diphosphate biosynthesis.2016 · DOI: 10.1042/bj20150805

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008313 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006580 ethanolamine metabolic process Biological Process

GO:0009229 thiamine diphosphate biosynthetic process Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0051262 protein tetramerization Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0065010 extracellular membrane-bounded organelle Cellular Component

GO:1903561 extracellular vesicle Cellular Component

GO:0004427 inorganic diphosphate phosphatase activity Molecular Function

GO:0016462 pyrophosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT1G17710

ath:AT1G73010

ath:AT4G29530

dre:100002812

xtr:493318

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.562

Rank 1 · TkA03G386300 · TK1151

Nucleus0.426

Rank 2 · TkA03G386300 · TK1151

Cell membrane0.084

Rank 3 · TkA03G386300 · TK1151

Endoplasmic reticulum0.062

Rank 4 · TkA03G386300 · TK1151

Mitochondrion0.056

Rank 5 · TkA03G386300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06888Put_Phosphatase4-233 aa

PF12710HAD6-132 aa

PF13419HAD_26-118 aa

PF00702Hydrolase54-118 aa

PF00702Hydrolase156-180 aa

PF13419HAD_2161-180 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G386300	`PF06888`	Put_Phosphatase	4	233	2.2e-94	316.0
TkA03G386300	`PF12710`	HAD	6	132	2.4e-07	32.1
TkA03G386300	`PF13419`	HAD_2	6	118	0.00058	20.6
TkA03G386300	`PF00702`	Hydrolase	54	118	0.00074	20.7
TkA03G386300	`PF00702`	Hydrolase	156	180	0.00074	20.7
TkA03G386300	`PF13419`	HAD_2	161	180	0.00058	20.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ62`	Arabidopsis thaliana	sp\|Q9FZ62\|PPSP2_ARATH Inorganic pyrophosphatase 2	62.000%	Swiss-Prot	High
`Q67YC0`	Arabidopsis thaliana	sp\|Q67YC0\|PPSP1_ARATH Inorganic pyrophosphatase 1	61.200%	Swiss-Prot	High
`Q9SU92`	Arabidopsis thaliana	sp\|Q9SU92\|PPSP3_ARATH Thiamine phosphate phosphatase-like protein	51.600%	Swiss-Prot	High

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