TkA03G370970 | RubberDandelionOmics

Gene overview

TkA03G370970

Reference: TK1151 Chr: Chr03 Coordinates: 91489531-91491677 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1481 bp · TkA03G370970|TK1151|cDNA

CAGAGTGCAAGGTCAGAGAAGGTTCCCTTCTGCATCAACACCTACAACTACAAAACACCTTCCTCCTCCTCAGTCCACTCTTCCTTTTTATTTATCTTTAATCTACCTACACTACTATCTCTCCATTCTCCATTCTGTTCTCCTTCTGAACTTAATTTCTTCAATACTCTAAGATTTACTCAAGTTTTCATTGATGTCGGTGCCACTGGAGCATGATTATATAGGCTTATCAGAAGCTTCTTCAGTGGAAAGAAGCTCTC...

CDS

Download CDS FASTA

915 bp · TkA03G370970|TK1151|CDS

ATGTCGGTGCCACTGGAGCATGATTATATAGGCTTATCAGAAGCTTCTTCAGTGGAAAGAAGCTCTCAATCCTCCAATATCTCATCCGATTCGGAGACCAACAATGTTCTTAATCTCAAAGCCACTGAGCTCCGGCTAGGGTTGCCTGGTTTTTCCAAAAATTCCGAAGCAAATGTCACCAAATTTGCTCATGTTAAGAACTTCATTTCAGGAGCTAAAAGAGGGTTTTCTGATGTTAATCTCGACGGTTCCGGCAAATG...

Protein

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304 aa · TkA03G370970|TK1151|PROTEIN

MSVPLEHDYIGLSEASSVERSSQSSNISSDSETNNVLNLKATELRLGLPGFSKNSEANVTKFAHVKNFISGAKRGFSDVNLDGSGKWDLNAGSEADLGKTSSVLFSPGIGINGGLEKDQVHQNVKPVEESKKEHVTGNGARPSAKAQVVGWPPIRSFRKNTMATNLSKNGGDAAAEGNSGGGGCLYVKVSMDGAPYLRKIDLKIYHNYAELSKALEKMFSCFTLGQCSSSGLQRREGLSESNLKDLLHGSECVLTYEDKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G370970`
TK1151 ID	TkA03G370970
OH-1004 ID	LXL04_019003
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	57.600
Protein coverage (%)	TK1151 98.026 / OH-1004 98.294 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G370970

Location Chr03:91489531-91491677 (+)

Description Similar to IAA27: Auxin-responsive protein IAA27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29080`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At2g22670`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At5g65670`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0335500`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`Os12g0601300`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019003 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0010311 lateral root formation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1901332 negative regulation of lateral root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT2G22670

ath:AT3G04730

ath:AT4G14550

ath:AT4G29080

ath:AT5G65670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.915

Rank 1 · TkA03G370970 · TK1151

Cytoplasm0.141

Rank 2 · TkA03G370970 · TK1151

Cell membrane0.053

Rank 3 · TkA03G370970 · TK1151

Endoplasmic reticulum0.029

Rank 4 · TkA03G370970 · TK1151

Plastid0.015

Rank 5 · TkA03G370970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309AUX_IAA41-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G370970	`PF02309`	AUX_IAA	41	295	9.7e-89	297.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSY8`	Arabidopsis thaliana	sp\|Q9ZSY8\|IAA27_ARATH Auxin-responsive protein IAA27	54.100%	Swiss-Prot	High
`Q38826`	Arabidopsis thaliana	sp\|Q38826\|IAA8_ARATH Auxin-responsive protein IAA8	49.700%	Swiss-Prot	Medium
`Q38827`	Arabidopsis thaliana	sp\|Q38827\|IAA9_ARATH Auxin-responsive protein IAA9	48.000%	Swiss-Prot	Medium
`Q5Z749`	Oryza sativa subsp. japonica	sp\|Q5Z749\|IAA21_ORYSJ Auxin-responsive protein IAA21	46.300%	Swiss-Prot	Medium
`P0C132`	Oryza sativa subsp. japonica	sp\|P0C132\|IAA30_ORYSJ Auxin-responsive protein IAA30	66.900%	Swiss-Prot	Medium

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