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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G349580
Reference: TK1151 Chr: Chr03 Coordinates: 86016228-86017505 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1116 bp · TkA03G349580|TK1151|cDNA

ATGGACTTCTACTCATGTAGTGGCAACAACTCCCACAACGCATGTAAGGTGTTCGATGAAATGCCCCAACGAGATACAATCGCATGGAACGTGTTGATTTCATGTTACATCCGTAACAACAGGACTCGAGACGTATTGACTGTTTTTGACACTATGCAGAATGAAGAACACAAGTGCGAACCAGATGATGTCACTTGTTTGTTAACACTTCAAGCTTGTTCTACCCTATGCACACTCGGATTCGGTGAGCGAATCCATGA...

CDS

Download CDS FASTA

1116 bp · TkA03G349580|TK1151|CDS

ATGGACTTCTACTCATGTAGTGGCAACAACTCCCACAACGCATGTAAGGTGTTCGATGAAATGCCCCAACGAGATACAATCGCATGGAACGTGTTGATTTCATGTTACATCCGTAACAACAGGACTCGAGACGTATTGACTGTTTTTGACACTATGCAGAATGAAGAACACAAGTGCGAACCAGATGATGTCACTTGTTTGTTAACACTTCAAGCTTGTTCTACCCTATGCACACTCGGATTCGGTGAGCGAATCCATGA...

Protein

Download Protein FASTA

371 aa · TkA03G349580|TK1151|PROTEIN

MDFYSCSGNNSHNACKVFDEMPQRDTIAWNVLISCYIRNNRTRDVLTVFDTMQNEEHKCEPDDVTCLLTLQACSTLCTLGFGERIHEYINNHGYHRALNLSNSLVSMYSKCGELKKAYEVFQNIPNKDVVSWTSMISGYASSGHGKEAINLFKEMKGRVGLLEDAYKLIISMSCTVQPDATIWRTLLSACKVHCHFELGEKVLNHLIELKGQEAGDYILLLNINHSTGNWEKVVEIRKEMKEKGIQTTPSASTIEIKGEI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G349580
TK1151 IDTkA03G349580
OH-1004 IDLXL04_018443
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)35.400
Protein coverage (%)TK1151 97.305 / OH-1004 72.308
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G349580
LocationChr03:86016228-86017505 (-)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47530 Pentatricopeptide repeat-containing protein At3g47530. No verified direct reference in this release
At4g21065 Pentatricopeptide repeat-containing protein At4g21065. No verified direct reference in this release
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At3g56550 Pentatricopeptide repeat-containing protein At3g56550. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT1G74630
ath:AT2G01510
ath:AT4G21065
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.645
Rank 1 · TkA03G349580 · TK1151
Plastid0.177
Rank 2 · TkA03G349580 · TK1151
Nucleus0.083
Rank 3 · TkA03G349580 · TK1151
Cytoplasm0.045
Rank 4 · TkA03G349580 · TK1151
Cell membrane0.009
Rank 5 · TkA03G349580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR6-24 aa
PF13041PPR_26-24 aa
PF12854PPR_16-21 aa
PF13812PPR_310-22 aa
PF29070MSC6_N10-68 aa
PF22330Rib_mS39_PPR10-35 aa
PF20431E_motif15-61 aa
PF14559TPR_1917-59 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G349580PF01535PPR6245.6e-31105.3
TkA03G349580PF13041PPR_26245.2e-29100.8
TkA03G349580PF12854PPR_16216.5e-1864.9
TkA03G349580PF13812PPR_310229.1e-1245.6
TkA03G349580PF29070MSC6_N10680.007816.1
TkA03G349580PF22330Rib_mS39_PPR10350.009116.5
TkA03G349580PF20431E_motif15617.9e-1658.8
TkA03G349580PF14559TPR_1917590.4111.7
TkA03G349580PF13812PPR_324629.1e-1245.6
TkA03G349580PF13041PPR_225735.2e-29100.8
TkA03G349580PF12854PPR_125526.5e-1864.9
TkA03G349580PF23276TPR_24271229.2e-0626.3
TkA03G349580PF01535PPR28555.6e-31105.3
TkA03G349580PF12921ATP1332550.1912.3
TkA03G349580PF13176TPR_734490.04714.5
TkA03G349580PF22330Rib_mS39_PPR361400.009116.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SN85Arabidopsis thalianasp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g4753051.800%Swiss-ProtHigh
A8MQA3Arabidopsis thalianasp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g2106534.900%Swiss-ProtMedium
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333034.100%Swiss-ProtMedium
Q9LXY5Arabidopsis thalianasp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g5655034.000%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial35.100%Swiss-ProtMedium

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