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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G348340
Reference: TK1151 Chr: Chr03 Coordinates: 85717082-85718721 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1228 bp · TkA03G348340|TK1151|cDNA

TTTTAGTTAATTTAAGAAAAACAACCACAAAAAAAATTATAAAAACGAGAAAAATGAGTTAACAAATTACCTGGCCTAAATTAGGAGAAAAAGTATACAACTGTTAAAAAGAAAGAAGAAAAAGTTGATACGATGGGAAGACTGTTGTTTACAAGCACCGCCCTTTGGCGACCTTCCTCTCCTCTCATGTCCGCCATCACCCTTTCTCTTTTTATCTATAGAGCTCTCTCAGCCTCTCAGGATCCCAATCCACGTTTTCT...

CDS

Download CDS FASTA

639 bp · TkA03G348340|TK1151|CDS

ATGGACGGTGCAAGTGGGGGTGCTGAAGGAGAGATTAGTTATGTCATTCCCAGATTGATCTCCGGTGCTGTCTCTGGTGCACTTACCGGCCTCTTTGCATTCGGTGGGGCGTTCACGGGTGCCATCACCGGTGCCTTAGCAGGTAGAGCTTCTGATTGTGGGGCCCTCCGTGGAGCTGGACTCGGAGCTCTTGCCGGAGCTGTTCTATCTGTCGAGGTTTTGGAGGCTTCACGTGCTTATTGGAGTCAAGAACTCTCTGG...

Protein

Download Protein FASTA

212 aa · TkA03G348340|TK1151|PROTEIN

MDGASGGAEGEISYVIPRLISGAVSGALTGLFAFGGAFTGAITGALAGRASDCGALRGAGLGALAGAVLSVEVLEASRAYWSQELSGSRNSSMADFMEELLRGRFSEEQFPPELLTAYHLQQVNVRSVEVLDLNDDVAYKGLSDDSLRRLPWHKISDESKLTQSTCCTICLQDIKVGEIARSLPQCLHMFHRTCVDKWLTRHGSCPICRQHV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G348340
TK1151 IDTkA03G348340
OH-1004 IDLXL04_008660
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G348340
LocationChr03:85717082-85718721 (+)
DescriptionSimilar to ATL24: NEP1-interacting protein-like 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g74410 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At5g66070 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At4g35840 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At2g17730 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At2g18670 RING-H2 finger protein ATL56. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008660 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009555 pollen development Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048443 stamen development Biological Process
GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
KEGG gene cross-reference
ath:AT1G74410
ath:AT2G17730
ath:AT4G35840
ath:AT5G05280
ath:AT5G66070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.347
Rank 1 · TkA03G348340 · TK1151
Nucleus0.240
Rank 2 · TkA03G348340 · TK1151
Mitochondrion0.236
Rank 3 · TkA03G348340 · TK1151
Endoplasmic reticulum0.230
Rank 4 · TkA03G348340 · TK1151
Golgi apparatus0.140
Rank 5 · TkA03G348340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13436Gly-zipper_OmpA4-8 aa
PF21724DUF686114-70 aa
PF06897DUF126920-54 aa
PF05433Rick_17kDa_Anti22-30 aa
PF13436Gly-zipper_OmpA22-50 aa
PF13441Gly-zipper_YMGG25-69 aa
PF05818TraT33-70 aa
PF05433Rick_17kDa_Anti35-69 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G348340PF13436Gly-zipper_OmpA481.19.9
TkA03G348340PF21724DUF686114700.03814.1
TkA03G348340PF06897DUF126920545.18.2
TkA03G348340PF05433Rick_17kDa_Anti22300.04314.4
TkA03G348340PF13436Gly-zipper_OmpA22501.19.9
TkA03G348340PF13441Gly-zipper_YMGG25690.06613.9
TkA03G348340PF05818TraT33704.87.6
TkA03G348340PF05433Rick_17kDa_Anti35690.04314.4
TkA03G348340PF13436Gly-zipper_OmpA54691.19.9
TkA03G348340PF06897DUF126954745.18.2
TkA03G348340PF13771zf-HC5HC2H1461960.06114.2
TkA03G348340PF21533EHMT1-2_CRR1582100.03215.3
TkA03G348340PF11789zf-Nse1622080.4911.0
TkA03G348340PF12906RINGv1621705.77.9
TkA03G348340PF13920zf-C3HC4_31631750.01116.2
TkA03G348340PF25143Zn_ribbon_IFT122_C1631700.07513.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LBA0Arabidopsis thalianasp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 258.800%Swiss-ProtMedium
Q9FKX5Arabidopsis thalianasp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 144.700%Swiss-ProtMedium
Q8GT75Arabidopsis thalianasp|Q8GT75|NIP1_ARATH NEP1-interacting protein 139.900%Swiss-ProtMedium
Q8GT74Arabidopsis thalianasp|Q8GT74|NIP2_ARATH NEP1-interacting protein 240.000%Swiss-ProtMedium
Q9ZV51Arabidopsis thalianasp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL5642.500%Swiss-ProtLow

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