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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G344710
Reference: TK1151 Chr: Chr03 Coordinates: 84807070-84813819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3757 bp · TkA03G344710|TK1151|cDNA

CTATTTTGCACAAATTTGTTTAAGAAAAGGGTTATTTTTGTCAAAGTTTTTTAAAGGGTAAGGGTCTCATTAAGCAGCATAACCAAAGAGGAAGTTAAGAAGAGATCGCGCAGGATCGAGTCGGGTTGTTCTACACAAGAAAACCAAAATTCCTCCGACGAGCGCCTTCCCATAAATTTCAAATTTAAGAACCCTAGATTAACTTATTTTGCGGTTATACTCTATTAAAGTGCTCCAAGAAGCTTGAAAATCGCAAAATC...

CDS

Download CDS FASTA

2772 bp · TkA03G344710|TK1151|CDS

ATGGTGCTTGTACTCTTATTGATATATTTTGATTTATTTCTTATGGGAGCTGGAGTTTTAAAACAAGAAAGAAGGGTTAAACAGAAACCTTCTGATGACAAATCAGATGATTCTGAGTCTGAAGAAGAAAGATTGCGTGACCAAATAGAAAGAGAGGAATTGGAGCGTCATTTAAGGGAAAAAGATGCAGCAAAAACAACAAAGCTGACTGAACAGAAGTTGTCCAAGAGGGAGGAAGAAGAGGCAATTAGGAGAGCCAA...

Protein

Download Protein FASTA

923 aa · TkA03G344710|TK1151|PROTEIN

MVLVLLLIYFDLFLMGAGVLKQERRVKQKPSDDKSDDSESEEERLRDQIEREELERHLREKDAAKTTKLTEQKLSKREEEEAIRRANALEDDDIGALRKVSRQEYLKKRELKKLEEIRDDIEDEQYLFDGVKLTEAEQREMRYKKQIYELVKKRSQEDDNVNEYRMPDAYDDDAGVNQEKRFAVAMERYRDSKDGDKMNPFAEQEAWEDHQIGKATLKYGSKNKQQAEDYNYVFEDQIEFIQGQVMGGVNVDDDEEMQEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G344710
TK1151 IDTkA03G344710
OH-1004 IDLXL04_008687
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 98.375 / OH-1004 88.413
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G344710
LocationChr03:84807070-84813819 (+)
DescriptionSimilar to ESP3: Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32490 Involved in pre-mRNA splicing. No verified direct reference in this release
At2g35340 May be involved in pre-mRNA splicing. No verified direct reference in this release
At4g16680 May be involved in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008687 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing Biological Process
GO:0045087 innate immune response Biological Process
GO:0140374 antiviral innate immune response Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT1G32490
ath:AT2G35340
hsa:8449
ptr:462546
ssc:100144456
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.751
Rank 1 · TkA03G344710 · TK1151
Cytoplasm0.267
Rank 2 · TkA03G344710 · TK1151
Endoplasmic reticulum0.032
Rank 3 · TkA03G344710 · TK1151
Mitochondrion0.031
Rank 4 · TkA03G344710 · TK1151
Cell membrane0.031
Rank 5 · TkA03G344710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13604AAA_3049-106 aa
PF00271Helicase_C52-87 aa
PF20720nSTAND3101-144 aa
PF00005ABC_tran128-135 aa
PF00437T2SSE288-325 aa
PF13191AAA_16288-323 aa
PF00270DEAD289-438 aa
PF20720nSTAND3289-313 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G344710PF13604AAA_30491060.003417.9
TkA03G344710PF00271Helicase_C52873.7e-1247.2
TkA03G344710PF20720nSTAND31011440.003417.8
TkA03G344710PF00005ABC_tran1281350.3612.2
TkA03G344710PF00437T2SSE2883250.003616.7
TkA03G344710PF13191AAA_162883230.2512.6
TkA03G344710PF00270DEAD2894383.3e-0627.7
TkA03G344710PF20720nSTAND32893130.003417.8
TkA03G344710PF12775AAA_72913270.1612.2
TkA03G344710PF00005ABC_tran2933120.3612.2
TkA03G344710PF13245AAA_192944060.0001322.9
TkA03G344710PF13604AAA_302944030.003417.9
TkA03G344710PF13401AAA_222954197.6e-0627.0
TkA03G344710PF00448SRP542974370.01415.8
TkA03G344710PF13401AAA_224685047.6e-0627.0
TkA03G344710PF00271Helicase_C4866123.7e-1247.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VY00Arabidopsis thalianasp|Q8VY00|ESP3_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH181.200%Swiss-ProtHigh
F4IJV4Arabidopsis thalianasp|F4IJV4|DEAH6_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH676.900%Swiss-ProtHigh
F4JMJ3Arabidopsis thalianasp|F4JMJ3|DEAH8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH863.800%Swiss-ProtHigh

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