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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G325090
Reference: TK1151 Chr: Chr03 Coordinates: 79843181-79846582 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3330 bp · TkA03G325090|TK1151|cDNA

ATGCCAACGGTCACTTTTCTTATACTTGCATTTCTCGCCACCGTGCTATTCTGCGCCACTCTCTCCACCACCGCTACAACGACGGAGATAGATGCTCTAACATCCTTCAAAGAAAATGTACGCGATCCACTCGGCGCGTTGGATGCCTGGAATACTTCTACGCCGGCTGCCCCGTGTGACTGGCGTGGGATTTCCTGTACAGACGGCAGAGTTCGTGAAATTCGTTTAGCTCGGCTTGGTTTATCTGGCCGGCTGAGTAG...

CDS

Download CDS FASTA

3330 bp · TkA03G325090|TK1151|CDS

ATGCCAACGGTCACTTTTCTTATACTTGCATTTCTCGCCACCGTGCTATTCTGCGCCACTCTCTCCACCACCGCTACAACGACGGAGATAGATGCTCTAACATCCTTCAAAGAAAATGTACGCGATCCACTCGGCGCGTTGGATGCCTGGAATACTTCTACGCCGGCTGCCCCGTGTGACTGGCGTGGGATTTCCTGTACAGACGGCAGAGTTCGTGAAATTCGTTTAGCTCGGCTTGGTTTATCTGGCCGGCTGAGTAG...

Protein

Download Protein FASTA

1109 aa · TkA03G325090|TK1151|PROTEIN

MPTVTFLILAFLATVLFCATLSTTATTTEIDALTSFKENVRDPLGALDAWNTSTPAAPCDWRGISCTDGRVREIRLARLGLSGRLSSRISELSQLRTLSLHTNNFNGSIPSALSQCSLLRVVYLQYNYFSGVLPPAFGNLTNLLVLNVAHNFLSGELPANLPPKVRYLDVSSNAVSGNIPANLSVSSEIQLINLSFNALSGQVPPVIGDFQNLQYLFLDSNNLYGTLPSAIANCSSLIHLSADNNQLQGLIPASIGNLLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G325090
TK1151 IDTkA03G325090
OH-1004 IDLXL04_008831
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G325090
LocationChr03:79843181-79846582 (+)
DescriptionSimilar to At4g36180: Probable LRR receptor-like serine/threonine-protein kinase At4g36180
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g36180 Probable LRR receptor-like serine/threonine-protein kinase At4g36180. No verified direct reference in this release
At2g33170 Probable leucine-rich repeat receptor-like protein kinase At2g33170. No verified direct reference in this release
At1g55610 Receptor with a serine/threonine-protein kinase activity.
BRL1, a leucine-rich repeat receptor-like protein kinase, is functionally redundant with BRI1 in regulating Arabidopsis brassinosteroid signaling.2004 · DOI: 10.1111/j.1365-313x.2004.02214.x
BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis.2004 · DOI: 10.1242/dev.01403
At5g63930 Probable leucine-rich repeat receptor-like protein kinase At5g63930. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0576900 Functions in the early stages of organ development by regulating cell division rate.
XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04877.x
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008831 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006898 receptor-mediated endocytosis Biological Process
GO:0006952 defense response Biological Process
GO:0006955 immune response Biological Process
GO:0009611 response to wounding Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0052544 defense response by callose deposition in cell wall Biological Process
GO:0090696 post-embryonic plant organ development Biological Process
GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process
KEGG gene cross-reference
ath:AT1G73080
ath:AT4G36180
ath:AT5G46330
dosa:Os04g0576900
dosa:Os04g0618700
osa:4336741
osa:4337016
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.874
Rank 1 · TkA03G325090 · TK1151
Endoplasmic reticulum0.079
Rank 2 · TkA03G325090 · TK1151
Cytoplasm0.064
Rank 3 · TkA03G325090 · TK1151
Nucleus0.047
Rank 4 · TkA03G325090 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA03G325090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_228-67 aa
PF12799LRR_476-110 aa
PF23598LRR_1484-149 aa
PF29594LRR_SKP284-121 aa
PF25013LRR_Zer-190-109 aa
PF24758LRR_At5g5637092-148 aa
PF00560LRR_194-116 aa
PF13855LRR_894-151 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G325090PF08263LRRNT_228671.3e-0938.8
TkA03G325090PF12799LRR_4761101.6e-46156.0
TkA03G325090PF23598LRR_14841493e-40138.8
TkA03G325090PF29594LRR_SKP2841213.4e-0627.2
TkA03G325090PF25013LRR_Zer-1901091.1e-0629.5
TkA03G325090PF24758LRR_At5g56370921481.1e-1042.3
TkA03G325090PF00560LRR_1941161.4e-71221.5
TkA03G325090PF13855LRR_8941513.2e-58194.1
TkA03G325090PF00560LRR_11191401.4e-71221.5
TkA03G325090PF13855LRR_81191733.2e-58194.1
TkA03G325090PF12799LRR_41191531.6e-46156.0
TkA03G325090PF13516LRR_61401512e-1246.8
TkA03G325090PF00560LRR_11421611.4e-71221.5
TkA03G325090PF23211LRR_LRWD11491935.1e-0627.0
TkA03G325090PF24048LRR_NXF1-51601750.00916.4
TkA03G325090PF13855LRR_81631993.2e-58194.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGS2Arabidopsis thalianasp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g3618067.600%Swiss-ProtLow
O49318Arabidopsis thalianasp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g3317037.100%Swiss-ProtLow
Q9ZWC8Arabidopsis thalianasp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 140.000%Swiss-ProtLow
Q9LVP0Arabidopsis thalianasp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g6393039.200%Swiss-ProtLow
G9LZD7Oryza sativa subsp. japonicasp|G9LZD7|XIAO_ORYSJ Probable inactive leucine-rich repeat receptor kinase XIAO61.500%Swiss-ProtLow

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