TkA03G209110 | RubberDandelionOmics

Gene overview

TkA03G209110

Reference: TK1151 Chr: Chr03 Coordinates: 52502500-52503441 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

573 bp · TkA03G209110|TK1151|cDNA

TTCTCGAGACCGGCAGGAGGTGACAGCATTTCCGTGACGATTCGATTTAGGCCTTTGAGTGAAAGAGAGTACCAGAGAGGAGATGAGGTTGCGTGGTACGCGGATGGAGATAAACTCGTGCGCAATGAGTACAATCCCGCTACTTCTTATGCGTTTGATAAAGTGTTTGGATCGTTTGCGGAGACTCACGAAGTTTATGAAGTAGCTGCTGGACCTGTTATAAGAGCTGTTATGGAAGGCATTAATGGAACTGTATTTGC...

CDS

Download CDS FASTA

324 bp · TkA03G209110|TK1151|CDS

TTCTCGAGACCGGCAGGAGGTGACAGCATTTCCGTGACGATTCGATTTAGGCCTTTGAGTGAAAGAGAGTACCAGAGAGGAGATGAGGTTGCGTGGTACGCGGATGGAGATAAACTCGTGCGCAATGAGTACAATCCCGCTACTTCTTATGCGTTTGATAAAGTGTTTGGATCGTTTGCGGAGACTCACGAAGTTTATGAAGTAGCTGCTGGACCTGTTATAAGAGCTGTTATGGAAGGCATTAATGGAACTGTATTTGC...

Protein

Download Protein FASTA

107 aa · TkA03G209110|TK1151|PROTEIN

FSRPAGGDSISVTIRFRPLSEREYQRGDEVAWYADGDKLVRNEYNPATSYAFDKVFGSFAETHEVYEVAAGPVIRAVMEGINGTVFAYGVTSSGKTHTMDVSIVFLS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G209110`
TK1151 ID	TkA03G209110
OH-1004 ID	LXL04_029499
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.300
Protein coverage (%)	TK1151 100.000 / OH-1004 52.709 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G209110

Location Chr03:52502500-52503441 (+)

Description Similar to KIN7D: Kinesin-like protein KIN-7D, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39050`	Kinesin-like protein KIN-7D, mitochondrial.	No verified direct reference in this release
`At2g21380`	Kinesin-like protein KIN-7M, chloroplastic.	No verified direct reference in this release
`At3g12020`	Kinesin-like protein KIN-7K, chloroplastic.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0512800`	Kinesin-like protein KIN-7K, chloroplastic.	No verified direct reference in this release
`Os04g0434600`	Kinesin-like protein KIN-7E, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029499 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G21730

ath:AT2G21380

ath:AT4G39050

osa:9271714

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654

Rank 1 · TkA03G209110 · TK1151

Nucleus0.321

Rank 2 · TkA03G209110 · TK1151

Peroxisome0.081

Rank 3 · TkA03G209110 · TK1151

Cell membrane0.081

Rank 4 · TkA03G209110 · TK1151

Mitochondrion0.070

Rank 5 · TkA03G209110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225Kinesin15-100 aa

PF16796Microtub_bd33-100 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G209110	`PF00225`	Kinesin	15	100	2.7e-21	76.6
TkA03G209110	`PF16796`	Microtub_bd	33	100	5.7e-10	40.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W5R5`	Arabidopsis thaliana	sp\|Q8W5R5\|KN7D_ARATH Kinesin-like protein KIN-7D, mitochondrial	80.400%	Swiss-Prot	High
`Q9SJU0`	Arabidopsis thaliana	sp\|Q9SJU0\|KN7M_ARATH Kinesin-like protein KIN-7M, chloroplastic	78.300%	Swiss-Prot	High
`F4J8L3`	Arabidopsis thaliana	sp\|F4J8L3\|KN7K_ARATH Kinesin-like protein KIN-7K, chloroplastic	63.000%	Swiss-Prot	High
`Q9FW70`	Oryza sativa subsp. japonica	sp\|Q9FW70\|KN7K_ORYSJ Kinesin-like protein KIN-7K, chloroplastic	76.300%	Swiss-Prot	High
`B9FFA3`	Oryza sativa subsp. japonica	sp\|B9FFA3\|KN7E_ORYSJ Kinesin-like protein KIN-7E, chloroplastic	69.600%	Swiss-Prot	High

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