LXL04_029499 | RubberDandelionOmics

Gene overview

LXL04_029499

Reference: OH-1004 Chr: Chr06 Coordinates: 92395118-92396088 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

612 bp · LXL04_029499|LXL04_029499|OH1004|cDNA

ATGGCAGCTTCCTCTTCAAGAGGACAAAGCAGTTCACCATTCCCCAACCACAAGCCTTCAAGTCCattttcatcatcttcatcatcttcttctttcaAGCAGACTGTACATCGATCATCATCTTCTGCTGCAACTTTCAACGGAGGCTCGGGGAACGGTTACGGTTCGAGATCTGATACTCTTGGTCGGACTACATCTGATTCGATGTACTCCCGAGGTGGTTACGAAGCGCCTTCGCCTGTAGATTATCCGTCTGCCAA...

CDS

Download CDS FASTA

612 bp · LXL04_029499|LXL04_029499|OH1004|CDS

ATGGCAGCTTCCTCTTCAAGAGGACAAAGCAGTTCACCATTCCCCAACCACAAGCCTTCAAGTCCATTTTCATCATCTTCATCATCTTCTTCTTTCAAGCAGACTGTACATCGATCATCATCTTCTGCTGCAACTTTCAACGGAGGCTCGGGGAACGGTTACGGTTCGAGATCTGATACTCTTGGTCGGACTACATCTGATTCGATGTACTCCCGAGGTGGTTACGAAGCGCCTTCGCCTGTAGATTATCCGTCTGCCAA...

Protein

Download Protein FASTA

203 aa · LXL04_029499|LXL04_029499|OH1004|PROTEIN

MAASSSRGQSSSPFPNHKPSSPFSSSSSSSSFKQTVHRSSSSAATFNGGSGNGYGSRSDTLGRTTSDSMYSRGGYEAPSPVDYPSANELLDEPIDEFSRPAGGDSISVTIRFRPLSEREYQRGDEVVWYADGDKLVRNEYNPATSYAFDKVLGSFAETHEVYEVAAGPVIRAAMEGINGTVFAYGVTSSGKTHTMHVSIVFFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029499`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029499

Location Chr06:92395118-92396088 (+)

Description Similar to KIN7D: Kinesin-like protein KIN-7D, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39050`	Kinesin-like protein KIN-7D, mitochondrial.	No verified direct reference in this release
`At2g21380`	Kinesin-like protein KIN-7M, chloroplastic.	No verified direct reference in this release
`At1g21730`	Kinesin-like protein KIN-7C, mitochondrial.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0512800`	Kinesin-like protein KIN-7K, chloroplastic.	No verified direct reference in this release
`Os04g0434600`	Kinesin-like protein KIN-7E, chloroplastic.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029499 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005871 kinesin complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003777 microtubule motor activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008017 microtubule binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G21730

ath:AT2G21380

ath:AT4G39050

osa:9271714

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.465

Rank 1 · LXL04_029499 · OH-1004

Nucleus0.318

Rank 2 · LXL04_029499 · OH-1004

Cell membrane0.143

Rank 3 · LXL04_029499 · OH-1004

Plastid0.094

Rank 4 · LXL04_029499 · OH-1004

Lysosome / Vacuole0.071

Rank 5 · LXL04_029499 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00225.30Kinesin111-196 aa

PF16796.12Microtub_bd111-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029499	`PF00225.30`	Kinesin	111	196	9.3e-20	71.6
LXL04_029499	`PF16796.12`	Microtub_bd	111	196	6.8e-09	36.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W5R5`	Arabidopsis thaliana	Kinesin-like protein KIN-7D, mitochondrial	61.585%	Swiss-Prot	strong database homology
`Q9SJU0`	Arabidopsis thaliana	Kinesin-like protein KIN-7M, chloroplastic	60.870%	Swiss-Prot	strong database homology
`Q8W5R6`	Arabidopsis thaliana	Kinesin-like protein KIN-7C, mitochondrial	65.591%	Swiss-Prot	weak database homology
`Q9FW70`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7K, chloroplastic	72.816%	Swiss-Prot	moderate database homology
`B9FFA3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-7E, chloroplastic	68.817%	Swiss-Prot	weak database homology

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